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Fair Value Measurements - Fair Value by Balance Sheet Grouping (Details) - USD ($)
$ in Thousands
Mar. 31, 2016
Sep. 30, 2015
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities $ 2,097,086 $ 2,380,563
FHLB and FRB stock 113,187 107,198
Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 2,097,086 2,380,563
Held-to-maturity securities 1,558,087 1,643,216
Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 2,097,086 2,380,563
Held-to-maturity securities 1,564,349 1,637,420
Level 1 | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Cash and cash equivalents 276,084 284,049
Level 1 | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Cash and cash equivalents 276,084 284,049
Level 1 | Equity securities | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 101,591 101,952
Level 1 | Equity securities | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 101,591 101,952
Level 2 | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
FHLB and FRB stock 113,187 107,198
Other assets - interest rate contracts 17,498 11,879
Customer accounts 10,543,384 10,631,703
FHLB advances 1,980,000 1,830,000
Level 2 | Carrying Amount | Interest rate contracts    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Other liabilities 17,498 11,879
Level 2 | Carrying Amount | Commercial loan hedge    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Other liabilities 2,329 966
Level 2 | Carrying Amount | Long term borrowing hedge    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Other liabilities 25,242 14,555
Level 2 | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
FHLB and FRB stock 113,187 107,198
Other assets - interest rate contracts 17,498 11,879
Customer accounts 9,671,338 10,004,290
FHLB advances 2,086,109 1,938,384
Level 2 | Estimated Fair Value | Interest rate contracts    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Other liabilities 17,498 11,879
Level 2 | Estimated Fair Value | Commercial loan hedge    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Other liabilities 2,329 966
Level 2 | Estimated Fair Value | Long term borrowing hedge    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Other liabilities 25,242 14,555
Level 2 | Agency pass-through certificates | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Held-to-maturity securities 1,558,087 1,643,216
Level 2 | Agency pass-through certificates | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Held-to-maturity securities 1,564,349 1,637,420
Level 2 | Obligations of U.S. government | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 264,544 482,464
Level 2 | Obligations of U.S. government | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 264,544 482,464
Level 2 | Obligations of states and political subdivisions | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 27,335 27,123
Level 2 | Obligations of states and political subdivisions | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 27,335 27,123
Level 2 | Corporate debt securities | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 506,269 505,800
Level 2 | Corporate debt securities | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 506,269 505,800
Level 2 | Agency pass-through certificates | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 1,105,016 1,160,518
Level 2 | Agency pass-through certificates | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 1,105,016 1,160,518
Level 2 | Other Commercial MBS | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 92,331 102,706
Level 2 | Other Commercial MBS | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Available-for-sale securities 92,331 102,706
Level 3 | Carrying Amount    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Loans receivable 9,545,322 9,170,634
FDIC indemnification asset 13,480 16,275
Level 3 | Estimated Fair Value    
Fair Value, Balance Sheet Grouping, Financial Statement Captions [Line Items]    
Loans receivable 10,059,040 9,667,750
FDIC indemnification asset $ 12,803 $ 15,522