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Goodwill and Intangible Assets - Additional Information (Detail)
6 Months Ended 9 Months Ended 12 Months Ended
Feb. 01, 2016
USD ($)
Mar. 31, 2016
reporting_unit
Jun. 30, 2016
reporting_unit
Sep. 30, 2016
USD ($)
Sep. 30, 2015
USD ($)
Sep. 30, 2014
USD ($)
Sep. 30, 2013
USD ($)
Apr. 01, 2016
Nov. 30, 2015
USD ($)
Aug. 14, 2015
USD ($)
Goodwill and Intangible Assets Disclosure [Line Items]                    
Number of reporting units | reporting_unit   6 5              
Number of reporting units with goodwill | reporting_unit   5                
Carrying amount of goodwill       $ 202,138,000 $ 121,408,000 $ 109,501,000        
Impairment loss       0 0 398,000        
Amortization expense for intangible assets       15,000,000 12,900,000 10,600,000        
BioStorage Technologies, Inc.                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Carrying amount of goodwill                 $ 79,639,000  
Goodwill, acquired during period       79,700,000            
Amortization expense for intangible assets       2,900,000            
Contact Co., Ltd                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Carrying amount of goodwill                   $ 4,195,000
Measurement period adjustment       (1,100,000)            
Amortization expense for intangible assets       700,000            
CeligoCell Cytometer product line                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Impairment loss           400,000 $ 2,000,000      
Brooks Product Solutions                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Number of reporting units | reporting_unit   4                
Brooks Semiconductor Solutions Group                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Number of reporting units | reporting_unit     4              
Carrying amount of goodwill       66,837,000 65,783,000 62,123,000        
Brooks Life Science Systems                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Number of reporting units | reporting_unit     1              
Carrying amount of goodwill       135,301,000 $ 55,625,000 $ 47,378,000        
Polycold and CTI Cryogenics Reporting Units                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Number of reporting units | reporting_unit   2                
BSSG Cryogenics Reporting Unit                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Number of reporting units | reporting_unit   1                
Carrying amount of goodwill       $ 24,000,000            
Polycold Reporting Unit                    
Goodwill and Intangible Assets Disclosure [Line Items]                    
Carrying amount of goodwill $ 24,000,000                  
Percentage of fair value in excess of carrying amount 18.00%   12.00%         12.00%    
Goodwill, impairment loss $ 0