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Goodwill and Intangible Assets Narrative (Details)
3 Months Ended 6 Months Ended 9 Months Ended
Feb. 01, 2016
USD ($)
Jun. 30, 2016
USD ($)
Jun. 30, 2015
USD ($)
Mar. 31, 2016
reporting_unit
Jun. 30, 2016
USD ($)
reporting_unit
Jun. 30, 2015
USD ($)
Apr. 01, 2016
Nov. 30, 2015
USD ($)
Sep. 30, 2015
USD ($)
Aug. 14, 2015
USD ($)
Sep. 30, 2014
USD ($)
Goodwill [Line Items]                      
Number of reporting units | reporting_unit       6 5            
Number of reporting units with goodwill | reporting_unit       5              
Carrying amount of goodwill   $ 202,386,000     $ 202,386,000       $ 121,408,000   $ 109,501,000
Amortization expense for intangible assets   3,800,000 $ 3,200,000   11,100,000 $ 9,600,000          
BioStorage Technologies, Inc.                      
Goodwill [Line Items]                      
Carrying amount of goodwill               $ 79,889,000      
Goodwill acquired during period         79,900,000            
Amortization expense for intangible assets   900,000     2,000,000            
Contact Co., Ltd                      
Goodwill [Line Items]                      
Carrying amount of goodwill                   $ 4,195,000  
Measurement period adjustment   (1,100,000)                  
Amortization expense for intangible assets   200,000     $ 500,000            
Brooks Product Solutions                      
Goodwill [Line Items]                      
Number of reporting units | reporting_unit       4              
Brooks Semiconductor Solutions Group                      
Goodwill [Line Items]                      
Number of reporting units | reporting_unit         4            
Carrying amount of goodwill   66,833,000     $ 66,833,000       65,783,000   62,123,000
Brooks Life Science Systems                      
Goodwill [Line Items]                      
Number of reporting units | reporting_unit         1            
Carrying amount of goodwill   $ 135,553,000     $ 135,553,000       $ 55,625,000   $ 47,378,000
Polycold and CTI Cryogenics Reporting Units                      
Goodwill [Line Items]                      
Number of reporting units | reporting_unit       2              
BSSG Cryogenics Reporting Unit                      
Goodwill [Line Items]                      
Number of reporting units | reporting_unit       1              
CTI Cryogenics Reporting Unit                      
Goodwill [Line Items]                      
Carrying amount of goodwill $ 0                    
Polycold Reporting Unit                      
Goodwill [Line Items]                      
Goodwill impairment 0                    
Carrying amount of goodwill $ 24,000,000                    
Percentage of fair value in excess of carrying amount (percent) 18.00% 12.00%     12.00%   12.00%