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Condensed Consolidated Statements of Cash Flows (Unaudited) (USD $)
In Thousands, unless otherwise specified
3 Months Ended
Mar. 31, 2012
Mar. 31, 2011
Cash flows from operating activities:    
Net loss $ (41,097) $ (36,034)
Adjustments to reconcile net loss to net cash used in operating activities:    
Non-cash interest expense on liability related to sale of future royalties 1,815  
Stock-based compensation 4,234 4,802
Depreciation and amortization 3,480 3,856
Impairment of long-lived assets 1,675  
Other non-cash transactions 295 309
Changes in operating assets and liabilities:    
Accounts receivable (5,865) 22,942
Inventory (1,452) (4,446)
Other assets 4,305 (1,199)
Accounts payable (1,290) (2,895)
Accrued compensation (4,620) (1,572)
Accrued expenses 1,094 1,961
Accrued clinical trial expenses 773 1,505
Deferred revenue 3,226 (2,555)
Other liabilities (1,191) (1,544)
Net cash used in operating activities (34,618) (14,870)
Cash flows from investing activities:    
Purchases of investments (102,023) (372,723)
Maturities of investments 151,964 113,235
Sales of investments   61,368
Purchases of property and equipment (1,516) (3,765)
Net cash provided by (used in) investing activities 48,425 (201,885)
Cash flows from financing activities:    
Payments of capital lease obligations (566) (459)
Proceeds from sale of future royalties, net of transaction costs 119,589  
Issuance of common stock, net of issuance costs 479 221,958
Net cash provided by financing activities 119,502 221,499
Effect of exchange rates on cash and cash equivalents (136) (14)
Net increase in cash and cash equivalents 133,173 4,730
Cash and cash equivalents at beginning of period 15,312 17,755
Cash and cash equivalents at end of period $ 148,485 $ 22,485