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CONSOLIDATED STATEMENTS OF CASH FLOWS - USD ($)
$ in Thousands
12 Months Ended
Dec. 31, 2015
Dec. 31, 2014
Dec. 31, 2013
Cash flows from operating activities:      
Net loss $ (231,156) $ (162,602) $ (274,158)
Adjustments to reconcile net loss to net cash used in operating activities:      
Depreciation, amortization and impairment charges 12,755 8,814 4,136
Stock-based compensation 37,020 32,403 35,421
Deferred executive compensation expense   119 963
Benefit from intraperiod tax allocation (4,586)    
Gain on disposition of stock   (4,768)  
Repayment of interest related to facility lease obligation (3,297)    
Increase (decrease) from:      
Accounts receivable (7,290) (7,092) (1,305)
Inventory 1,096 (560) (413)
Other current assets 7,544 (17,536) (2,113)
Other assets (4,834) 2,645 (2,714)
Accounts payable 5,458 (137) 2,478
Accrued compensation and benefits 4,235 8,317 913
Accrued product development expenses 8,174 (2,782) 2,679
Other accrued expenses 8,162 2,570 1,340
Other liabilities 7,206 2,644 14,834
Deferred revenue 268 82,801 10
Deferred executive compensation paid   (2,630) (3,953)
Net cash used in operating activities (159,245) (57,794) (221,882)
Cash flows from investing activities:      
Proceeds from maturities of marketable securities     45,000
Change in restricted cash     (10,319)
Investment in property and equipment (17,205) (2,787) (8,543)
Proceeds from disposition of stock   4,768  
Net cash provided by (used in) investing activities (17,205) 1,981 26,138
Cash flows from financing activities:      
Proceeds from royalty financing 50,000    
Royalty financing fees paid (2,905)    
Proceeds from issuance of convertible debt, including equity component   200,000  
Convertible debt fees paid   (7,079)  
Proceeds from issuance of warrants   27,580  
Purchase of convertible bond hedges   (43,220)  
Repayment of long-term debt (1,377) (9,100) (2,100)
Principal payments under capital lease obligations     (15)
Proceeds from issuance of common stock, net of issuance costs     310,037
Reimbursements of amounts related to facility lease obligation 6,365   2,741
Proceeds from issuance of common stock pursuant to stock option and purchase plans 4,436 3,695 6,284
Payment of tax withholding obligations related to stock compensation (2,262) (816) (3,363)
Net cash provided by financing activities 54,257 171,060 313,584
Effect of exchange rates on cash 393 262 (40)
Net increase (decrease) in cash and cash equivalents (121,800) 115,509 117,800
Cash and cash equivalents, beginning of year 352,688 237,179 119,379
Cash and cash equivalents, end of year 230,888 352,688 237,179
Supplemental disclosures:      
Interest paid 7,259 8,077 153
Income taxes paid 238 185 17
Capitalization of construction-in-progress related to facility lease obligation 32,639 96,558 96,671
Non-cash transaction - property and equipment included in accounts payable or accruals 5,267 $ 298 $ 738
Non-cash transaction - marketable equity securities recorded at fair market value $ 11,407