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Collaborative Arrangements (Tables)
6 Months Ended
Jun. 30, 2014
Collaborative Arrangements  
Collaborator revenues
During the three and six months ended June 30, 2014 and 2013, the Company recognized the following revenues attributable to the CFFT collaboration:
 
Three Months Ended
June 30,
 
Six Months Ended
June 30,
 
2014
 
2013
 
2014
 
2013
 
(in thousands)
Collaborative revenues attributable to the CFFT collaboration
$
1,604

 
$
4,244

 
$
4,472

 
$
7,803

During the three and six months ended June 30, 2014 and 2013, the Company recognized the following revenues attributable to the Janssen NV collaboration:
 
Three Months Ended
June 30,
 
Six Months Ended
June 30,
 
2014
 
2013
 
2014
 
2013
 
(in thousands)
Royalty revenues (INCIVO)
$
5,698

 
$
44,070

 
$
10,633

 
$
83,114

Collaborative revenues:
 
 
 
 
 
 
 
Up-front and amendment payments revenues
$

 
$
3,107

 
$

 
$
6,214

Net reimbursement for telaprevir development costs
1,483

 
37

 
2,872

 
9

Reimbursement for manufacturing services

 

 

 
10,299

        Total collaborative revenues attributable to the Janssen NV collaboration
$
1,483

 
$
3,144

 
$
2,872

 
$
16,522

Total revenues attributable to the Janssen NV collaboration
$
7,181

 
$
47,214

 
$
13,505

 
$
99,636

Summary of activity related to net loss (income) attributable to noncontrolling interest (Alios)
A summary of net loss attributable to noncontrolling interest (Alios) for the three and six months ended June 30, 2013 is as follows:
 
Three Months Ended
June 30, 2013
 
Six Months Ended
June 30, 2013
 
(in thousands)
Loss before benefit from income taxes
$
6,824

 
$
12,121

Decrease in fair value of contingent milestone and royalty payments
80

 
2,820

Benefit from income taxes
(2,357
)
 
(5,783
)
Net loss attributable to noncontrolling interest (Alios)
$
4,547

 
$
9,158