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Condensed Consolidated Statements of Cash Flows - USD ($)
$ in Thousands
9 Months Ended
Sep. 30, 2019
Sep. 30, 2018
Cash flows from operating activities:    
Net loss $ (479,372) $ (221,023)
Adjustments to reconcile net loss to cash flows from operating activities:    
Acquired in-process research and development 173,240  
Depreciation and amortization 22,341 8,718
Amortization of investment discount (7,449) (4,742)
Loss from debt extinguishment   2,322
Non-cash interest expense 15,887 15,206
Stock-based compensation 56,538 37,289
Other 892 94
Changes in operating assets and liabilities, net:    
Net increase in accounts receivable (18,988) (19,133)
Net increase in inventory (40,915) (32,211)
Net increase in other assets (94,710) (84,344)
Net increase in accounts payable, accrued expenses, deferred revenue and other liabilities 79,868 31,584
Net cash used in operating activities (292,668) (266,240)
Cash flows from investing activities:    
Purchase of property and equipment (42,374) (40,954)
Purchase of intangible assets (2,048) (2,633)
Purchase of available-for-sale securities (984,225) (651,387)
Purchases of restricted investment   (353)
Maturity and sale of available-for-sale securities 1,470,848 562,575
Net cash provided by (used in) investing activities 269,645 (132,752)
Cash flows from financing activities:    
Proceeds from sale of common stock, net of offering costs 365,353  
Taxes paid related to net share settlement of equity awards (4,337)  
Proceeds from exercise of stock options and purchase of stock under the Employee Stock Purchase Program 24,572 43,031
Repayment of June 2015 and July 2017 Term Loan   (30,000)
Proceeds from revolving line of credit   217,722
Repayment of revolving line of credit   (218,631)
Repayments on mortgage loans   (1,265)
Payment of debt extinguishment   (1,990)
Net cash provided by financing activities 385,588 8,867
Increase (decrease) in cash, cash equivalents and restricted cash 362,565 (390,125)
Cash, cash equivalents and restricted cash:    
Beginning of period 370,829 599,827
End of period 733,394 209,702
Reconciliation of cash, cash equivalents and restricted cash:    
Cash and cash equivalents 724,829 $ 209,702
Restricted cash in other assets $ 8,565  
Restricted Cash, Noncurrent, Asset, Statement of Financial Position [Extensible List] us-gaap:OtherAssetsNoncurrent us-gaap:OtherAssetsNoncurrent
Total cash, cash equivalents and restricted cash $ 733,394 $ 209,702
Supplemental disclosure of cash flow information:    
Cash paid during the period for interest 4,275 6,861
Supplemental schedule of non-cash investing activities and financing activities:    
Reclassification of long term investments to short term investments   9,980
Reclassification of revolving line of credit balance to other receivable   683
Intangible assets included in accrued expenses 210 234
Property and equipment included in accrued expenses 2,117 $ 2,515
Myonexus Therapeutics, Inc. [Member]    
Cash flows from investing activities:    
Acquisition of Myonexus Therapeutics, Inc., net of cash acquired $ (172,556)