Exhibit 32.1

                          CEO CERTIFICATION PURSUANT TO
                             18 U.S.C. SECTION 1350



In connection with the Quarterly Report of Emclaire Financial Corp. (the
Corporation) on Form 10-Q for the period ending March 31, 2007 as filed with the
Securities and Exchange Commission on the date here (the Report), I, David L.
Cox, Chief Executive Officer of the Corporation, certify, pursuant to 18 U.S.C.
ss. 1350, as adopted pursuant to ss. 906 of the Sarbanes-Oxley Act of 2002,
that:

     (1)  The Report fully  complies with the  requirements  of section 13(a) or
          15(d) of the Securities Exchange Act of 1934; and

     (2)  The  information  contained  in the  Report  fairly  presents,  in all
          material respects,  the consolidated financial condition and result of
          operations of the Corporation.



/s/  David L. Cox
-----------------

David L. Cox
Chairman of the Board,
President and Chief Executive Officer


May 10, 2007