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CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS (Unaudited) (USD $)
 6 Months Ended
Mar. 31, 2015
Mar. 31, 2014
Cash flows from operating activities:    
Net loss $ (9,714,220)us-gaap_NetIncomeLoss $ (9,042,086)us-gaap_NetIncomeLoss
Adjustments to reconcile net loss to net cash used in operating activities:    
Depreciation and amortization 232,805us-gaap_DepreciationDepletionAndAmortization 212,025us-gaap_DepreciationDepletionAndAmortization
Stock based compensation expense 2,515,843us-gaap_ShareBasedCompensation 1,313,331us-gaap_ShareBasedCompensation
Change in fair value of warrant liability 2,994,540apdn_IncomeLossFromChangeInFairValueOfWarrantLiability 2,178,859apdn_IncomeLossFromChangeInFairValueOfWarrantLiability
Loss on conversion of promissory notes 980,842apdn_LossOnConversionOfPromissoryNotes  
Common stock issued for consulting services 22,676apdn_CommonStockIssuedForConsultingServices 337,500apdn_CommonStockIssuedForConsultingServices
Bad debt expense 2,779us-gaap_ProvisionForDoubtfulAccounts 16,144us-gaap_ProvisionForDoubtfulAccounts
Change in operating assets and liabilities:    
Accounts receivable (328,265)us-gaap_IncreaseDecreaseInAccountsReceivable 50,499us-gaap_IncreaseDecreaseInAccountsReceivable
Prepaid expenses and other current assets and deposits (24,578)us-gaap_IncreaseDecreaseInPrepaidDeferredExpenseAndOtherAssets 59,134us-gaap_IncreaseDecreaseInPrepaidDeferredExpenseAndOtherAssets
Accounts payable and accrued liabilities (298,577)us-gaap_IncreaseDecreaseInAccountsPayableAndAccruedLiabilities 344,572us-gaap_IncreaseDecreaseInAccountsPayableAndAccruedLiabilities
Deferred revenue (355,552)us-gaap_IncreaseDecreaseInDeferredRevenue 267,486us-gaap_IncreaseDecreaseInDeferredRevenue
Net cash used in operating activities (3,971,707)us-gaap_NetCashProvidedByUsedInOperatingActivitiesContinuingOperations (4,262,536)us-gaap_NetCashProvidedByUsedInOperatingActivitiesContinuingOperations
Cash flows used in investing activities:    
Purchase of property plant and equipment (197,875)us-gaap_PaymentsToAcquirePropertyPlantAndEquipment (109,581)us-gaap_PaymentsToAcquirePropertyPlantAndEquipment
Purchase of intangible assets (35,000)us-gaap_PaymentsToAcquireIntangibleAssets  
Net cash used in investing activities (232,875)us-gaap_NetCashProvidedByUsedInInvestingActivitiesContinuingOperations (109,581)us-gaap_NetCashProvidedByUsedInInvestingActivitiesContinuingOperations
Cash flows from financing activities:    
Net proceeds from sale of common stock and warrants 7,956,050apdn_NetProceedsFromSaleOfCommonStockAndWarrants  
Offering costs paid (69,598)apdn_PaymentOfOfferingCosts  
Purchase and cancelation of previously issued warrants (4,090,952)apdn_PurchaseAndCancelationOfPreviouslyIssuedWarrants  
Net cash provided by financing activities 3,795,500us-gaap_NetCashProvidedByUsedInFinancingActivitiesContinuingOperations   
Net decrease in cash and cash equivalents (409,082)us-gaap_CashAndCashEquivalentsPeriodIncreaseDecrease (4,372,117)us-gaap_CashAndCashEquivalentsPeriodIncreaseDecrease
Cash and cash equivalents at beginning of period 1,393,132us-gaap_CashAndCashEquivalentsAtCarryingValue 6,360,301us-gaap_CashAndCashEquivalentsAtCarryingValue
Cash and cash equivalents at end of period 984,050us-gaap_CashAndCashEquivalentsAtCarryingValue 1,988,184us-gaap_CashAndCashEquivalentsAtCarryingValue
Supplemental Disclosures of Cash Flow Information:    
Cash paid during period for interest      
Cash paid during period for taxes      
Non-cash investing and financing activities:    
Common stock issued for cashless exercise of options and warrants   19,570apdn_CommonStockIssuedForCashlessExerciseOfOptionsAndWarrants
Reclassification of deferred offering costs to additional paid in capital 181,104apdn_ReclassificationOfDeferredOfferingCostsToAdditionalPaidInCapital  
Offering costs incurred, and included in accounts payable and accrued liabilities 218,233apdn_DeferredOfferingCostsIncludedInAccountsPayableAndAccruedLiabilities  
Property, plant and equipment acquired, and included in accounts payable   7,794apdn_PropertyPlantAndEquipmentAcquiredIncludedInAccountsPayable
Intangible assets acquired, and included in accounts payable 73,000apdn_IntangibleAssetsAcquiredIncludedIinAccountsPayable  
Common stock issued upon conversion of promissory notes payable $ 1,843,750us-gaap_StockIssued1