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CONSOLIDATED STATEMENT OF CASH FLOWS (USD $)
12 Months Ended
Sep. 30, 2014
Sep. 30, 2013
Sep. 30, 2012
Cash flows from operating activities:      
Net loss $ (13,066,661)us-gaap_NetIncomeLoss $ (17,686,472)us-gaap_NetIncomeLoss $ (7,150,712)us-gaap_NetIncomeLoss
Adjustments to reconcile net loss to net cash used in operating activities:      
Depreciation and amortization 442,262us-gaap_DepreciationDepletionAndAmortization 206,344us-gaap_DepreciationDepletionAndAmortization 313,940us-gaap_DepreciationDepletionAndAmortization
Impairment of intellectual property   114,730us-gaap_ImpairmentOfIntangibleAssetsExcludingGoodwill  
Stock based compensation expense 1,964,053us-gaap_ShareBasedCompensation 1,517,524us-gaap_ShareBasedCompensation 1,953,844us-gaap_ShareBasedCompensation
Change in fair value of warrant liability 908,005us-gaap_FairValueAdjustmentOfWarrants 7,508,146us-gaap_FairValueAdjustmentOfWarrants  
Amortization of capitalized financing costs     85,975us-gaap_AmortizationOfFinancingCosts
Amortization of debt discount attributable to convertible debentures     541,120us-gaap_AmortizationOfDebtDiscountPremium
Fair value of vested warrants issued for service   28,256us-gaap_IssuanceOfStockAndWarrantsForServicesOrClaims 58,238us-gaap_IssuanceOfStockAndWarrantsForServicesOrClaims
Common stock issued in settlement of interest     102,844apdn_CommonStockIssuedInSettlementOfInterest
Fair value change from employee option modifications 69,288us-gaap_FairValueOptionChangesInFairValueGainLoss1 408,605us-gaap_FairValueOptionChangesInFairValueGainLoss1  
Common stock issued for consulting services 337,501apdn_CommonStockIssuedForConsultingServices    
Bad debt expense 19,755us-gaap_ProvisionForDoubtfulAccounts 77,415us-gaap_ProvisionForDoubtfulAccounts  
Change in operating assets and liabilities:      
Accounts receivable (181,935)us-gaap_IncreaseDecreaseInAccountsReceivable (453,059)us-gaap_IncreaseDecreaseInAccountsReceivable (88,407)us-gaap_IncreaseDecreaseInAccountsReceivable
Prepaid expenses and deposits 32,352us-gaap_IncreaseDecreaseInPrepaidDeferredExpenseAndOtherAssets (109,042)us-gaap_IncreaseDecreaseInPrepaidDeferredExpenseAndOtherAssets (16,565)us-gaap_IncreaseDecreaseInPrepaidDeferredExpenseAndOtherAssets
Accounts payable and accrued liabilities 527,783us-gaap_IncreaseDecreaseInAccountsPayableAndAccruedLiabilities 517,200us-gaap_IncreaseDecreaseInAccountsPayableAndAccruedLiabilities 239,044us-gaap_IncreaseDecreaseInAccountsPayableAndAccruedLiabilities
Deferred revenue 434,859us-gaap_IncreaseDecreaseInDeferredRevenue    
Net cash used in operating activities (8,512,738)us-gaap_NetCashProvidedByUsedInOperatingActivitiesContinuingOperations (7,870,353)us-gaap_NetCashProvidedByUsedInOperatingActivitiesContinuingOperations (3,960,679)us-gaap_NetCashProvidedByUsedInOperatingActivitiesContinuingOperations
Cash flows used in investing activities:      
Purchase of assets under RedWeb asset purchase agreement   (584,080)us-gaap_PaymentsToAcquireProductiveAssets  
Purchase of property and equipment (229,591)us-gaap_PaymentsToAcquirePropertyPlantAndEquipment (636,548)us-gaap_PaymentsToAcquirePropertyPlantAndEquipment (162,833)us-gaap_PaymentsToAcquirePropertyPlantAndEquipment
Net cash used in investing activities (229,591)us-gaap_NetCashProvidedByUsedInInvestingActivitiesContinuingOperations (1,220,628)us-gaap_NetCashProvidedByUsedInInvestingActivitiesContinuingOperations (162,833)us-gaap_NetCashProvidedByUsedInInvestingActivitiesContinuingOperations
Cash flows from financing activities:      
Net proceeds from sale of Series A and Series B Preferred Stock   10,735,000us-gaap_ProceedsFromIssuanceOfPreferredStockAndPreferenceStock  
Net proceeds from sale of common stock and warrants 2,156,264us-gaap_ProceedsFromIssuanceOfCommonStock 3,900,000us-gaap_ProceedsFromIssuanceOfCommonStock 2,101,000us-gaap_ProceedsFromIssuanceOfCommonStock
Proceeds from promissory notes, including $1,000,000 from a related party 1,800,000us-gaap_ProceedsFromNotesPayable    
Deferred offering costs (181,104)apdn_PaymentOfDeferredOfferingCosts    
Purchase and cancellation of previously issued warrants   (60,000)apdn_PurchaseAndCancellationOfPreviouslyIssuedWarrants  
Proceeds from exercise of options and warrants   151,500apdn_ProceedsFromExerciseOfOptionsAndWarrants  
Net cash provided by financing activities 3,775,160us-gaap_NetCashProvidedByUsedInFinancingActivitiesContinuingOperations 14,726,500us-gaap_NetCashProvidedByUsedInFinancingActivitiesContinuingOperations 2,101,000us-gaap_NetCashProvidedByUsedInFinancingActivitiesContinuingOperations
Net increase (decrease) in cash and cash equivalents (4,967,169)us-gaap_CashAndCashEquivalentsPeriodIncreaseDecrease 5,635,519us-gaap_CashAndCashEquivalentsPeriodIncreaseDecrease (2,022,512)us-gaap_CashAndCashEquivalentsPeriodIncreaseDecrease
Cash and cash equivalents at beginning of year 6,360,301us-gaap_CashAndCashEquivalentsAtCarryingValue 724,782us-gaap_CashAndCashEquivalentsAtCarryingValue 2,747,294us-gaap_CashAndCashEquivalentsAtCarryingValue
Cash and cash equivalents at end of year 1,393,132us-gaap_CashAndCashEquivalentsAtCarryingValue 6,360,301us-gaap_CashAndCashEquivalentsAtCarryingValue 724,782us-gaap_CashAndCashEquivalentsAtCarryingValue
Supplemental Disclosures of Cash Flow Information:      
Cash paid during period for interest         
Cash paid during period for income taxes         
Non-cash investing and financing transactions:      
Reclassification of warrants from liability to equity upon exercise of warrants 2,455,042apdn_ReclassificationOfWarrantsFromLiabilityToEquityUponExercise    
Property, plant and equipment acquired, and included in accounts payable   6,273apdn_PropertyPlantAndEquipmentAcquiredIncludedInAccountsPayable  
Common stock issued upon conversion of Series A and Series B preferred stock   1,129apdn_CommonStockIssuedUponConversionOfPreferredStock  
Common stock issued for cashless exercise of options and warrants 472apdn_CommonStockIssuedForCashlessExerciseOfOptionsAndWarrants 826apdn_CommonStockIssuedForCashlessExerciseOfOptionsAndWarrants  
Common stock issued in exchange for previously incurred debt and related accrued interest     $ 4,687,096us-gaap_DebtConversionConvertedInstrumentAmount1