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Shareholders' Equity (Tables)
9 Months Ended
Mar. 31, 2014
Stockholders' Equity Note [Abstract]  
Schedule of Stockholders Equity [Table Text Block] The following table sets forth shareholders’ equity and noncontrolling interest for the nine months ended March 31, 2014 and 2013:

    Nine Months Ended March 31,  
    2014     2013  
    Shareholders’
Equity
    Non-
Controlling
    Total     Shareholders’
Equity
    Non-
Controlling
    Total  
    Zygo Corp.     Interest     Equity     Zygo Corp.     Interest     Equity  
Equity, beginning of period   $ 181,962     $ 2,043     $ 184,005     $ 173,482     $ 2,355     $ 175,837  
                                                 
Net income     8,107       305       8,412       3,597       875       4,472  
Unrealized gain on hedge     16             16                    
Foreign currency translation effect     388       22       410       (337 )     79       (258 )
Total     8,511       327       8,838       3,260       954       4,214  
Share-based compensation     3,958             3,958       4,620             4,620  
Repurchase of restricted stock     (1,860 )           (1,860 )     (1,176 )           (1,176 )
Employee stock purchase     83             83       40             40  
Exercise of employee stock options and related tax effect     1,294             1,294       1,066             1,066  
Dividends attributable to noncontrolling interest           (458 )     (458 )           (1,101 )     (1,101 )
Purchase of subsidiary shares from noncontrolling interest                       (2,777 )     (378 )     (3,155 )
Equity, end of period   $ 193,948     $ 1,912     $ 195,860     $ 178,515     $ 1,830     $ 180,345