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Earnings per share (Table) (Details) (USD $)
In Thousands, except Share data, unless otherwise specified
3 Months Ended 6 Months Ended
Jun. 29, 2013
Jun. 30, 2012
Jun. 29, 2013
Jun. 30, 2012
Earnings Per Share Abstract        
Income (Loss) from Continuing Operations Attributable to Parent $ (14,979) $ 7,255 $ (9,796) $ 12,956
Earnings (loss) from discontinued operations, net of taxes (302) 890 (360) 1,081
Earnings (loss) attributable to SunOpta Inc. $ (15,281) $ 8,145 $ (10,156) $ 14,037
Earnings Per Share, Basic, by Common Class, Including Two Class Method [Line Items]        
Weighted Average Number of Shares Outstanding, Basic 66,202,211 65,854,718 66,147,358 65,832,112
Weighted Average Number of Shares Outstanding, Diluted 67,513,517 66,594,265 67,346,428 66,470,694
Earnings (loss) per share - basic        
from continuing operations basic $ (0.23) $ 0.11 $ (0.15) $ 0.20
from discontinued operations basic $ 0.00 $ 0.01 $ (0.01) $ 0.02
Earnings Per Share Total $ (0.23) $ 0.12 $ (0.15) $ 0.21
Earnings (loss) per share - diluted        
from continuing operations diluted $ (0.23) $ 0.11 $ (0.15) $ 0.19
from discontinued operations diluted $ 0.00 $ 0.01 $ (0.01) $ 0.02
Earnings Per Share Diluted Total $ (0.23) $ 0.12 $ (0.15) $ 0.21
Options Held [Member]
       
Earnings Per Share, Basic, by Common Class, Including Two Class Method [Line Items]        
Incremental Common Shares Attributable to Call Options and Warrants 979,281 566,949 888,566 511,094
Warrant [Member]
       
Earnings Per Share, Basic, by Common Class, Including Two Class Method [Line Items]        
Incremental Common Shares Attributable to Call Options and Warrants 332,025 172,598 310,504 127,488