UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

WASHINGTON, D.C.  20549

FORM 10-Q

x QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended September 30, 2009

OR

¨ TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from           to          

Commission file number: 001-33530

BIOFUEL ENERGY CORP.

(Exact name of registrant as specified in its charter)

Delaware	20-5952523
(State of incorporation)	(I.R.S. employer identification number)
1600 Broadway, Suite 2200
Denver, Colorado	80202
(Address of principal executive offices)	(Zip Code)

(303) 640-6500

(Registrant’s telephone number, including area code)

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant as required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.  Yes x  No ¨

Indicate by check mark whether the registrant has submitted electronically and posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T (§ 232.405 of this chapter) during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).  Yes ¨  No ¨

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, or a non-accelerated filer. See definition of “accelerated filer and large accelerated filer” in Rule 12b-2 of the Exchange Act. (Check one):

Large accelerated filer ¨	Accelerated filer ¨
Non-accelerated filer ¨	Smaller reporting company x

Indicate by check mark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).  Yes o  No x

Number of shares of common stock outstanding as of November 12, 2009: 25,884,211 exclusive of 809,606 shares held in treasury.

PART I.  FINANCIAL INFORMATION

ITEM 1. FINANCIAL STATEMENTS

The accompanying interim consolidated financial statements of BioFuel Energy Corp. (the “Company”) have been prepared in conformity with accounting principles generally accepted in the United States of America.  The statements are unaudited but reflect all adjustments which, in the opinion of management, are necessary to fairly present the Company’s financial position and results of operations. All such adjustments are of a normal recurring nature. The results of operations for the interim period are not necessarily indicative of the results for the full year.  For further information, refer to the financial statements and notes presented in the Company’s Annual Report on Form 10-K for the twelve months ended December 31, 2008 (filed with the Securities and Exchange Commission on March 30, 2009).

2

BioFuel Energy Corp.

Consolidated Balance Sheets

(in thousands, except share and per share data)

(Unaudited)

	September 30,			December 31,
	2009			2008
Assets
Current assets
Cash and equivalents	$	8,167		$	12,299
Accounts receivable		16,163			16,669
Inventories		13,709			14,929
Certificates of deposit		1,882			—
Prepaid expenses		1,413			2,153
Restricted cash		—			612
Other current assets		344			203
Total current assets		41,678			46,865
Property, plant and equipment, net		289,508			305,350
Certificates of deposit		—			4,015
Debt issuance costs, net		6,833			7,917
Restricted cash		—			1,003
Other assets		2,297			574
Total assets	$	340,316		$	365,724
Liabilities and stockholders’ equity
Current liabilities
Accounts payable	$	7,415		$	11,274
Construction retainage		—			9,407
Current portion of long-term debt		33,647			11,588
Current portion of derivative financial instrument		619			2,658
Current portion of tax increment financing		309			298
Other current liabilities		1,902			2,932
Total current liabilities		43,892			38,157
Long-term debt, net of current portion		220,785			226,351
Tax increment financing, net of current portion		5,729			5,887
Derivative financial instrument, net of current portion		—			83
Other non-current liabilities		1,284			487
Total liabilities		271,690			270,965
Commitments and contingencies
BioFuel Energy Corp. stockholders’ equity
Preferred stock, $0.01 par value; 5.0 million shares authorized and no shares outstanding at September 30, 2009 and December 31, 2008		—			—
Common stock, $0.01 par value; 100.0 million shares authorized and 25,235,497 shares outstanding at September 30, 2009 and 23,318,636 shares outstanding at December 31, 2008		252			233
Class B common stock, $0.01 par value; 50.0 million shares authorized and 8,149,431 shares outstanding at September 30, 2009 and 10,082,248 shares outstanding at December 31, 2008		81			101
Less common stock held in treasury, at cost, 809,606 shares at September 30, 2009 and December 31, 2008		(4,316	)		(4,316	)
Additional paid-in capital		136,439			134,360
Accumulated other comprehensive loss		(355	)		(2,741	)
Accumulated deficit		(67,425	)		(46,947	)
Total BioFuel Energy Corp. stockholders’ equity		64,676			80,690
Noncontrolling interest		3,950			14,069
Total equity		68,626			94,759
Total liabilities and stockholders’ equity	$	340,316		$	365,724

The accompanying notes are an integral part of these financial statements.

3

BioFuel Energy Corp.

Consolidated Statements of Operations

(in thousands, except per share data)

(Unaudited)

	Three Months Ended September 30,						Nine Months Ended September 30,
	2009			2008			2009			2008
Net sales	$	91,138		$	90,549		$	295,096		$	90,841
Cost of goods sold		89,039			103,765			298,911			104,021
Gross income (loss)		2,099			(13,216	)		(3,815	)		(13,180	)
General and administrative expenses:
Compensation expense		1,467			1,115			4,551			6,560
Other		4,270			1,353			8,060			8,408
Other operating expense		150			1,345			150			1,345
Operating loss		(3,788	)		(17,029	)		(16,576	)		(29,493	)
Other income (expense):
Interest income		13			135			74			987
Interest expense		(4,598	)		(1,632	)		(12,036	)		(1,632	)
Other non-operating expense		—			(2,123	)		(1	)		(1,785	)
Loss on derivative financial instruments		—			(49,992	)		—			(39,912	)
Loss before income taxes		(8,373	)		(70,641	)		(28,539	)		(71,835	)
Income tax provision (benefit)		—			—			—			—
Net loss		(8,373	)		(70,641	)		(28,539	)		(71,835	)
Less: Net loss attributable to the noncontrolling interest		2,139			37,493			8,061			37,856
Net loss attributable to BioFuel Energy Corp. common shareholders	$	(6,234	)	$	(33,148	)	$	(20,478	)	$	(33,979	)
Loss per share - basic and diluted attributable to BioFuel Energy Corp. common shareholders	$	(0.26	)	$	(2.18	)	$	(0.87	)	$	(2.23	)
Weighted average shares outstanding
Basic		24,397			15,210			23,418			15,250
Diluted		24,397			15,210			23,418			15,250

The accompanying notes are an integral part of these financial statements.

4

BioFuel Energy Corp.

Consolidated Statements of Stockholders’ Equity

(in thousands, except share data)

(Unaudited)

																					Accumulated
							Class B									Additional					Other						Total
	Common Stock						Common Stock						Treasury			Paid-in		Accumulated			Comprehensive			Noncontrolling			Stockholders’
	Shares			Amount			Shares			Amount			Stock			Capital		Deficit			Loss			Interest			Equity
Balance at December 31, 2007		15,994,124		$	160			17,396,686		$	174		$	(2,040	)	$	130,409	$	(6,082	)	$	(950	)	$	68,799		$	190,470
Stock based compensation		—			—			—			—			—			682		—			—			—			682
Exchange of Class B shares to common		7,314,438			73			(7,314,438	)		(73	)		—			3,269		—			—			(11,468	)		(8,199	)
Issuance of restricted stock, (net of forfeitures)		10,074			—			—			—			—			—		—			—			—			—
Purchase of common stock for treasury		—			—			—			—			(2,276	)		—		—			—			—			(2,276	)
Comprehensive loss:		—
Hedging settlements		—			—			—			—			—			—		—			1,098			—			1,098
Change in derivative financial instrument fair value		—			—			—			—			—			—		—			(2,889	)		—			(2,889	)
Net loss		—			—			—			—			—			—		(40,865	)		—			(43,262	)		(84,127	)
Total comprehensive loss																												(85,918	)
Balance at December 31, 2008		23,318,636			233			10,082,248			101			(4,316	)		134,360		(46,947	)		(2,741	)		14,069			94,759
Stock based compensation		—			—			—			—			—			284		—			—			—			284
Exchange of Class B shares to common		1,932,817			20			(1,932,817	)		(20	)		—			1,794		—			—			(1,794	)		—
Issuance of restricted stock, (net of forfeitures)		(15,956	)		(1	)		—			—			—			1		—			—			—			—
Comprehensive loss:
Hedging settlements		—			—			—			—			—			—		—			2,065			777			2,842
Change in derivative financial instrument fair value		—			—			—			—			—			—		—			321			(1,041	)		(720	)
Net loss		—			—			—			—			—			—		(20,478	)		—			(8,061	)		(28,539	)
Total comprehensive loss																												(26,417	)
Balance at September 30, 2009		25,235,497		$	252			8,149,431		$	81		$	(4,316	)	$	136,439	$	(67,425	)	$	(355	)	$	3,950		$	68,626

The accompanying notes are an integral part of these financial statements.

5

BioFuel Energy Corp.

Consolidated Statements of Cash Flows

(in thousands)

(Unaudited)

	Nine Months Ended September 30,
	2009			2008
Cash flows from operating activities
Net loss	$	(28,539	)	$	(71,835	)
Adjustments to reconcile net loss to net cash used in operating activities:
Stock based compensation expense		284			521
Depreciation and amortization		20,988			2,562
Loss on disposal of assets		—			1,095
Changes in operating assets and liabilities:
Accounts receivable		506			(18,727	)
Inventories		1,220			(17,066	)
Prepaid expenses		740			(1,221	)
Accounts payable		(4,183	)		26,448
Other current liabilities		(1,330	)		2,974
Other assets and liabilities		(380	)		707
Net cash used in operating activities		(10,694	)		(74,542	)
Cash flows from investing activities
Capital expenditures (including payment of construction retainage)		(12,570	)		(41,972	)
Proceeds from insurance claim		300			—
Purchase of certificates of deposit		—			(1,847	)
Redemption of certificates of deposit		2,159			—
Net cash used in investing activities		(10,111	)		(43,819	)
Cash flows from financing activities
Proceeds from issuance of debt		20,387			85,500
Repayment of debt		(4,383	)		—
Withdrawal from debt service reserve		1,615			—
Payment of notes payable and capital leases		(718	)		(453	)
Repayment of tax increment financing		(228	)		(369	)
Payment of debt issuance costs		—			(387	)
Purchase of treasury stock		—			(2,276	)
Net cash provided by financing activities		16,673			82,015
Net decrease in cash and equivalents		(4,132	)		(36,346	)
Cash and equivalents, beginning of period		12,299			55,987
Cash and equivalents, end of period	$	8,167		$	19,641
Cash paid for taxes	$	8		$	305
Cash paid for interest	$	10,993		$	9,801
Non-cash investing and financing activities:
Additions to property, plant and equipment unpaid during period	$	324		$	2,171
Additions to property, plant and equipment financed with notes payable and capital lease	$	445		$	—
Additions to debt and deferred offering costs unpaid during period	$	—		$	37

The accompanying notes are an integral part of these financial statements.

6

BioFuel Energy Corp.

Notes to Unaudited Consolidated Financial Statements

1. Organization, Nature of Business, and Basis of Presentation

Organization and Nature of Business

BioFuel Energy Corp. (the “Company”, “we”, “our” or “us”)  produces and sells ethanol and distillers grain, through its two ethanol production facilities located in Wood River, Nebraska (“Wood River”) and Fairmont, Minnesota (“Fairmont”).  Both facilities, with a combined annual nameplate production capacity of 230 Mmgy, based on the maximum amount of permitted denaturant, commenced start-up and began commercial operations in late June 2008.  At each location, Cargill, Incorporated (“Cargill”), a related party with whom we have an extensive contractual relationship, has a strong local presence and owns adjacent grain storage facilities.  From inception, we have worked closely with Cargill, one of the world’s leading agribusiness companies. Cargill provides corn procurement services, markets the ethanol and distillers grain we produce and provides transportation logistics for our two plants under long-term contracts.  In addition, we lease their adjacent grain storage and handling facilities.  Our operations and cash flows are subject to fluctuations due to changes in commodity prices.  We may use derivative financial instruments, such as futures contracts, swaps and option contracts to manage commodity prices as further discussed in Note 8.

We were incorporated as a Delaware corporation on April 11, 2006 to invest solely in BioFuel Energy, LLC (the “LLC”), a limited liability company organized on January 25, 2006 to build and operate a series of ethanol production facilities in the Midwestern United States.  The Company’s headquarters are located in Denver, Colorado.

At September 30, 2009, the Company owned 75.0% of the LLC membership units with the remaining 25.0% owned by the historical equity investors of the LLC.  The Class B common shares of the Company are held by the historical equity investors of the LLC, who held 8,149,431 membership interests in the LLC that, together with the corresponding Class B shares, can be exchanged for newly issued shares of common stock of the Company on a one-for-one basis.  During the nine months ended September 30, 2009, unit holders exchanged 1,932,817 membership units in the LLC for common stock substantially all of which are or will be eligible for sale under Rule 144 promulgated under the Securities Act of 1933 (the “Act”) upon lapse of a six-month holding period.   LLC membership units held by the historical equity investors are recorded as noncontrolling interest on the consolidated balance sheets.  Holders of shares of Class B common stock have no economic rights but are entitled to one vote for each share held.  Shares of Class B common stock are retired upon exchange of the related membership units in the LLC.

The aggregate book value of the assets of the LLC at September 30, 2009 and December 31, 2008 was approximately $347.7 million and $373.6 million, respectively, and such assets are collateral for the LLC’s obligations. Our bank facility imposes restrictions on the ability of the LLC’s subsidiaries that own and operate our Wood River and Fairmont plants to pay dividends or make other distributions to us, which restricts our ability to pay dividends.

From inception through June 30, 2008, the LLC’s operations primarily consisted of arranging financing for and constructing its two ethanol plants in Wood River and Fairmont.  Both plants commenced start-up and began the production of ethanol in late June 2008.  In late August 2008, both plants reached provisional acceptance, the first of three tests required under their respective turn-key construction contracts, at which time operational control of the plants passed to the LLC from the contractor.  We exited development stage status in the third quarter of 2008.  Both plants achieved project completion milestones in December 2008.

Basis of Presentation and Liquidity Considerations

The accompanying consolidated financial statements have been prepared in conformity with accounting principles generally accepted in the United States of America, which contemplate our continuation as a going concern.  Our results of operations and financial condition depend substantially on the price of our main commodity input, corn, relative to the price of our main commodity product, ethanol, which is known in the industry as the “crush spread”.  The prices of these commodities are volatile and beyond our control. As shown in the accompanying consolidated financial statements, the Company incurred a net loss of $8.4 million and $28.5 million during the three and nine months ended September 30, 2009, respectively, primarily resulting from poor operating margins due to unfavorable crush spreads and operating issues in addition to increased legal, financial advisory, and interest expenses associated with the Company’s negotiations with its lenders relating to restructuring and loan conversion.

Certain subsidiaries of the LLC (the “Operating Subsidiaries”) received a Notice of Default dated May 22, 2009 from its lenders under the senior secured credit facility (“Senior Debt facility”), asserting that a “material adverse effect” had occurred.  The Company disagreed with the lenders assertion that a material adverse effect had occurred and, beginning on May 28, 2009, entered into a series of consent agreements with its lenders granting the Operating Subsidiaries limited access to its bank accounts as it continued discussions with the lenders relating to the asserted events of default and conversion of the construction loans to term loans.  Effective September 29, 2009, the Operating Subsidiaries entered into a Waiver and Amendment to the Senior Debt which converted the two construction loans to two term loans and waived all defaults previously asserted by the lenders.  At conversion, the Waiver and Amendment to the Senior Debt provided for $198.6 million of total funded debt under the term loans.  Following the conversion, the Operating Subsidiaries made their first principal payment on September 30, 2009 of $3.2 million which resulted in $195.4 million in term loans outstanding as of September 30, 2009.  The Waiver and Amendment to the Senior Debt also provides for up to $9.7 million in additional loans to make future principal and interest payments under the Senior Debt facility.

7

Although we have come to a resolution with the lenders concerning our Senior Debt facility and losses have narrowed in the third quarter as a result of crush spreads steadily improving throughout the year to date, we cannot predict when or if crush spreads will narrow again or if current or more favorable margins will continue.  In the event crush spreads narrow further, and remain at unprofitable levels for an extended period of time, we may not be able to generate sufficient cash flow to meet our obligations and sustain our operations.  In addition, we have had, and continue to have, severely limited liquidity, with $8.2 million in cash on hand as of September 30, 2009.  If we do not have sufficient cash flow to service our debt, we would need to refinance all or part of our existing debt, sell assets, borrow more money or sell securities, any or all of which we may not be able to do on commercially reasonable terms or at all.  If we are unable to do so, we may be required to curtail operations or cease operating altogether.

2. Summary of Significant Accounting Policies

Principles of Consolidation and Noncontrolling Interest

The accompanying consolidated financial statements include the Company, the LLC and its wholly owned subsidiaries: BFE Holding Company, LLC; BFE Operating Company, LLC; Buffalo Lake Energy, LLC; and Pioneer Trail Energy, LLC.  All inter-company balances and transactions have been eliminated in consolidation.

Use of Estimates

Preparation of financial statements in conformity with accounting principles generally accepted in the United States (“GAAP”) requires management to make estimates and assumptions that affect reported amounts of assets and liabilities and disclosures in the accompanying notes at the date of the financial statements and the reported amounts of revenues and expenses during the reporting period.  Actual results could differ from those estimates.

Revenue Recognition

Sales and related costs of goods sold are included in income when risk of loss and title transfers upon delivery of ethanol and distillers grain to Cargill.  In accordance with the LLC’s agreements, through its subsidiaries, with Cargill for the marketing and sale of ethanol and related products, commissions, freight, and shipping and handling charges are deducted from the gross sales price at the time revenue is recognized.  Ethanol sales are recorded net of commissions.  Commissions on ethanol sales totaled $798,000 and $2,474,000 during the three and nine months ended September 30, 2009, respectively and totaled $925,000 in both the three and nine month periods ended September 30, 2008.  Sales of dried distillers grain with solubles (“DDGS”) and wet distillers grain with solubles (“WDGS”) are also recorded net of commissions.  Commissions on distillers grain totaled $546,000 and $2,005,000 for the three and nine months ended September 30, 2009, respectively, and totaled $556,000 and $579,000 during the three and nine months ended September 30, 2008, respectively.

Cost of goods sold

Cost of goods sold primarily includes costs of raw materials (primarily corn and natural gas), purchasing and receiving costs, inspection costs, shipping costs, other distribution expenses, plant management, certain compensation costs and general facility overhead charges.

General and administrative expenses

General and administrative expenses consist of salaries and benefits paid to our management and administrative employees, expenses relating to third party services, insurance, travel, office rent, marketing and other expenses, including certain expenses associated with being a public company, such as fees paid to our independent auditors associated with our annual audit and quarterly reviews, compliance with Section 404 of the Sarbanes-Oxley Act, and listing and transfer agent fees.  During the three and nine months ended September 30, 2009, significant third party legal and financial advisory expenses were incurred associated with the Company's negotiations with its lenders relating to restructuring and loan conversion.

Cash and Equivalents

Cash and equivalents include highly liquid investments with an original maturity of three months or less.  Cash equivalents are currently comprised of money market mutual funds.  At September 30, 2009, we had $2,257,000 invested in money market mutual funds held at one financial institution, which is in excess of FDIC insurance limits.

8

Accounts Receivable

Accounts receivable are carried at original invoice amount less an estimate made for doubtful receivables based on a review of all outstanding amounts on a monthly basis.  Management determines the allowance for doubtful accounts by regularly evaluating individual customer receivables and considering a customer’s financial condition, credit history and current economic conditions.  Receivables are written off when deemed uncollectible.  Recoveries of receivables previously written off are recorded as a reduction to bad debt expense when received.  As of September 30, 2009 and December 31, 2008, Cargill was our only customer and no allowance was considered necessary.

Concentrations of Credit Risk

Credit risk represents the accounting loss that would be recognized at the reporting date if counterparties failed completely to perform as contracted.  Concentrations of credit risk, whether on- or off-balance sheet, that arise from financial instruments exist for groups of customers or counterparties when they have similar economic characteristics that would cause their ability to meet contractual obligations to be similarly affected by changes in economic or other conditions described below.

During the three and nine months ended September 30, 2009, the Company recorded sales to Cargill representing 100% of total net sales.  As of September 30, 2009, the LLC, through its subsidiaries, had receivables from Cargill of approximately $16.2 million, representing 100% of total accounts receivable.

The LLC, through its subsidiaries, purchases corn, its largest cost component in producing ethanol, from Cargill.  During the three and nine months ended September 30, 2009, corn purchases from Cargill totaled $60.6 million and $208.0 million, respectively, and during the three and nine months ended September 30, 2008, totaled $76.1 million and $113.1 million, respectively.

Inventories

Raw materials inventories, which consist primarily of corn, denaturant, supplies, and chemicals and work in process inventories are valued at the lower-of-cost-or-market, with cost determined on a first-in, first-out basis.  Finished goods inventories consist of ethanol and distillers grain and are stated at lower of average cost or market.

A summary of inventories is as follows (in thousands):

	September 30,		December 31,
	2009		2008
Raw materials	$	8,209	$	8,687
Work in process		2,300		2,052
Finished goods		3,200		4,190
	$	13,709	$	14,929

Due to a decline in commodity prices, the LLC recorded a lower of cost or market inventory write-down of $189,000 for corn and $12,000 for distillers grains at September 30, 2009 and a write down of $450,000 for ethanol at December 31, 2008.

Derivative Instruments and Hedging Activities

Derivatives are recognized on the balance sheet at their fair value and are included in the accompanying balance sheets as “derivative financial instruments.”  On the date the derivative contract is entered into, the Company may designate the derivative as a hedge of a forecasted transaction or of the variability of cash flows to be received or paid related to a recognized asset or liability (“cash flow” hedge).  Changes in the fair value of a derivative that is highly effective and that is designated and qualifies as a cash flow hedge are recorded in other comprehensive income, net of tax effect, until earnings are affected by the variability of cash flows (e.g., when periodic settlements on a variable rate asset or liability are recorded in earnings).  Changes in the fair value of undesignated derivative instruments or derivatives that do not qualify for hedge accounting are recognized in current period operations.  The Company has designated its interest rate swaps as cash flow hedges.  The value of these instruments is recorded on the balance sheet as an asset in other assets, and as a liability under derivative financial instruments, while the unrealized gain/loss on the change in the fair value has been recorded in other comprehensive income (loss).  The statement of operations impact of these hedges is included in interest expense.  See Note 8 for additional required disclosure.

Accounting guidance for derivatives requires a company to evaluate contracts to determine whether the contracts are derivatives.  Certain contracts that meet the definition of a derivative may be exempted as normal purchases or normal sales.  Normal purchases and normal sales are contracts that provide for the purchase or sale of something other than a financial instrument or derivative instrument that will be delivered in quantities expected to be used or sold over a reasonable period in the normal course of business.  The Company’s contracts that meet the requirements of normal purchases are exempted from the derivative accounting and reporting requirements.

9

Certificates of Deposit

At September 30, 2009, certificates of deposit was comprised of approximately $1.9 million held in three certificates of deposit with remaining maturities less than one year.  These certificates of deposit have been pledged as collateral supporting three letters of credit.  Two of these certificates of deposit totaling $0.7 million are held at one financial institution, which is in excess of FDIC insurance limits.  The remaining certificate of deposit for $1.2 million is held with another financial institution and this amount is also in excess of FDIC insurance limits.

Restricted Cash

At September 30, 2009, there were no amounts held as restricted cash.  At December 31, 2008, restricted cash was comprised of $1,615,000, held in debt service reserve accounts in accordance with our Senior Debt facility.  The balance outstanding as of December 31, 2008 was utilized to pay interest amounts due under the Senior Debt facility during the nine months ended September 30, 2009.

Property, Plant and Equipment

Property, plant and equipment is recorded at cost.  All costs related to purchasing and developing land or the engineering, design and construction of a plant are capitalized.  Maintenance, repairs and minor replacements are charged to operating expenses while major replacements and improvements are capitalized.  Costs not directly related to a site or plants are expensed.  The Company began depreciation of land improvements and its plant assets in September 2008 as construction of its production facilities was considered to be complete at the end of August 2008.  Depreciation is computed by the straight-line method over the following estimated useful lives:

	Years
Land improvements		20-30
Buildings and improvements		7-40
Machinery and equipment:
Railroad equipment		20-39
Facility equipment		20-39
Other		5-7
Office furniture and equipment		3-10

Capitalized Interest

The Company capitalized interest costs and the amortization of debt issuance costs related to its ethanol plant development and construction expenditures through August 2008 as part of the cost of constructed assets.  There were no interest or debt issuance costs capitalized for the three or nine months ended September 30, 2009.  Interest and debt issuance costs capitalized for the three and nine months ended September 30, 2008 totaled $2,849,000 and $10,208,000, respectively.

Debt Issuance Costs

Debt issuance costs are stated at cost, less accumulated amortization.  Debt issuance costs represent costs incurred related to the Company’s senior debt, subordinated debt and tax increment financing agreements.  These costs are being amortized over the term of the related debt and any such amortization was capitalized as part of the value of construction in progress during the construction period.  After the Wood River and Fairmont plants reached provisional acceptance in August 2008, the amortization of debt issuance costs has been expensed.  Estimated future debt issuance cost amortization as of September 30, 2009 is as follows (in thousands):

Remainder of 2009	$	362
2010		1,409
2011		1,298
2012		1,298
2013		1,298
Thereafter		1,168
Total	$	6,833

10

Impairment of Long-Lived Assets

The Company assesses impairment of long-lived assets, which are comprised primarily of property, plant and equipment related to the Company’s ethanol plants whenever circumstances indicate their carrying value may not be fully recoverable.  Recoverability is measured by comparing the carrying value of an asset with estimated undiscounted future cash flows expected to result from the use of the asset and its eventual disposition. An impairment loss is reflected as the amount by which the carrying amount of the asset exceeds the fair value of the asset.  Fair value is determined based on the present value of estimated expected future cash flows using a discount rate commensurate with the risk involved, quoted market prices or appraised values, depending on the nature of the assets.  As of September 30, 2009, no circumstances existed which would indicate the carrying value of long-lived assets may not be fully recoverable.  Therefore, no recoverability test was performed.

Stock-Based Compensation

Expense associated with stock-based awards and other forms of equity compensation is based on fair value at grant and recognized on a straight line basis in the financial statements over the requisite service period, if any, for those awards that are expected to vest.  The Company adopted the use of the simplified method of calculating the expected term for stock-based grants during 2008.  During 2009, the Company used historical data to calculate the expected term for new stock-based grants.

Asset Retirement Obligations

Asset retirement obligations are recognized when a contractual or legal obligation exists and a reasonable estimate of the amount can be made.  At September 30, 2009, the Company had accrued asset retirement obligation liabilities of $132,000 and $167,000 for its plants at Wood River and Fairmont, respectively.  At December 31, 2008, the Company had accrued asset retirement obligation liabilities of $129,000 and $162,000 for its plants at Wood River and Fairmont, respectively.

The asset retirement obligations accrued for Wood River relate to the obligations in our contracts with Cargill and Union Pacific Railroad (“Union Pacific”).  According to the grain elevator lease with Cargill, the equipment that is adjacent to the grain elevator may be required at Cargill’s discretion to be removed at the end of the lease.   In addition, according to the contract with Union Pacific, the buildings that are built near their land in Wood River may be required at Union Pacific’s request to be removed at the end of our contract with them.  The asset retirement obligations accrued for Fairmont relate to the obligations in our contracts with Cargill and in our water permit with the state of Minnesota.  According to the grain elevator lease with Cargill, the equipment that is adjacent to the grain elevator being leased may be required at Cargill’s discretion to be removed at the end of the lease.   In addition, the water permit in Fairmont requires that we secure all above ground storage tanks whenever we discontinue the use of our equipment for an extended period of time in Fairmont.  The estimated costs of these obligations have been accrued at the current net present value of these obligations at the end of an estimated 20 year life for each of the plants.  These liabilities have corresponding assets recorded in property, plant and equipment, which are being depreciated over 20 years.

Income Taxes

The Company accounts for income taxes using the asset and liability method, under which deferred tax assets and liabilities are recognized for the future tax consequences attributable to temporary differences between financial statement carrying amounts of existing assets and liabilities and their respective tax bases and operating loss and tax credit carryforwards.  Deferred tax assets and liabilities are measured using enacted tax rates expected to apply to taxable income in the years in which those temporary differences are expected to be recovered or settled.  The effect on deferred tax assets and liabilities of a change in tax rates is recognized in income in the period that includes the enactment date.  The Company regularly reviews historical and anticipated future pre-tax results of operations to determine whether the Company will be able to realize the benefit of its deferred tax assets.  A valuation allowance is required to reduce the potential deferred tax asset when it is more likely than not that all or some portion of the potential deferred tax asset will not be realized due to the lack of sufficient taxable income.  The Company establishes reserves for uncertain tax positions that reflect its best estimate of deductions and credits that may not be sustained.  As the Company has incurred losses since its inception and expects to continue to incur losses for the foreseeable future, we will provide a valuation allowance against all deferred tax assets until the Company believes that such assets will be realized. The Company includes interest on tax deficiencies and income tax penalties in the provision for income taxes.

Fair Value of Financial Instruments

The Company’s financial instruments, including cash and equivalents, accounts receivable, certificates of deposit, and accounts payable are carried at cost, which approximates their fair value because of the short-term maturity of these instruments.  The fair value of the Company’s senior debt and notes payable (excluding the Cargill note payable) approximates their carrying amounts based on anticipated interest rates that management believes would currently be available to the Company for similar issues of debt, taking into account the current credit risk of the Company and other market factors.  The Company is unable to determine a fair value of its subordinated debt and its note payable to Cargill due to the nature of the relationship between the parties and the Company.  The derivative financial instruments are carried at fair value.

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Comprehensive Income (Loss)

Comprehensive income (loss) consists of the unrealized changes in the fair value on the Company’s financial instruments designated as cash flow hedges.  The financial instrument liabilities are recorded at fair value and the changes in the fair value are recorded as other comprehensive income (loss).

Interim Financial Statements

In May 2009, the Financial Accounting Standards Board (“FASB”) issued new requirements related to subsequent events, to incorporate the accounting and disclosure requirements for subsequent events into GAAP.  This new requirement introduces new terminology, defines a date through which management must evaluate subsequent events, and lists the circumstances under which an entity must recognize and disclose events or transactions occurring after the balance-sheet date. The Company adopted these new requirements as of June 30, 2009, which was the required effective date.

The Company evaluated its September 30, 2009 financial statements for subsequent events through November 12, 2009, the date the financial statements were issued.  The Company is not aware of any subsequent events which would require recognition or disclosure in the financial statements.

From time to time, new accounting pronouncements are issued by the FASB or other standards setting bodies that are adopted by us as of the specified effective date. Unless otherwise discussed, our management believes that the impact of recently issued standards that are not yet effective will not have a material impact on our consolidated financial statements upon adoption.

3. Property, Plant and Equipment

Property, plant and equipment, stated at cost, consist of the following at September 30, 2009 and December 31, 2008, respectively (in thousands):

	September 30,			December 31,
	2009			2008
Land and land improvements	$	19,637		$	18,887
Construction in progress		2,196			1,690
Buildings and improvements		49,379			49,138
Machinery and equipment		241,337			238,918
Office furniture and equipment		6,047			5,982
		318,596			314,615
Accumulated depreciation		(29,088	)		(9,265	)
Property, plant and equipment, net	$	289,508		$	305,350

Depreciation expense related to property, plant and equipment was $6,669,000 and $19,823,000 for the three and nine months ended September 30, 2009 and $2,417,000 and $2,543,000 for the three and nine months ended September 30, 2008.

The Company began depreciating land improvements and its plant assets in September 2008 as construction of the Wood River and Fairmont plants was considered to be complete at the end of August 2008.  The Company has netted liquidated damages, arising out of completion delays at both plants, of $19.1 million against its plant assets.  The construction retainage amounts included in property, plant and equipment at December 31, 2008 were $5,218,000 related to the Fairmont facility and $4,189,000 related to the Wood River facility. The construction retainage amounts payable as of December 31, 2008 were paid in full in February 2009.

4. Earnings Per Share

Basic earnings per share are computed by dividing net income by the weighted average number of common shares outstanding during each period.  Diluted earnings per share are calculated using the treasury stock method and includes the effect of all dilutive securities, including stock options, restricted stock and Class B common shares.  For those periods in which the Company incurred a net loss, the inclusion of the potentially dilutive shares in the computation of diluted weighted average shares outstanding would have been anti-dilutive to the Company’s loss per share, and, accordingly, all potentially dilutive shares have been excluded from the computation of diluted weighted average shares outstanding in those periods.

For both the three and nine months ended September 30, 2009, 334,075 shares issuable upon the exercise of stock options have been excluded from the computation of diluted earnings per share as the exercise price exceeded the average price of the Company’s shares during the period.  For both the three and nine months ended September 30, 2008, 602,700 shares issuable upon the exercise of stock options have been excluded from the computation of diluted earnings per share as the exercise price exceeded the average price of the Company’s shares during the period.

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A summary of the reconciliation of basic weighted average shares outstanding to diluted weighted average shares outstanding follows:

	Three Months Ended September 30,						Nine Months Ended September 30,
	2009			2008			2009			2008
Weighted average common shares outstanding - basic		24,397,327			15,209,891			23,418,419			15,250,384
Potentially dilutive common stock equivalents
Class B common shares		8,149,431			17,303,151			9,115,731			17,340,019
Restricted stock		28,564			88,162			43,801			102,266
		8,177,995			17,391,313			9,159,532			17,442,285
		32,575,322			32,601,204			32,557,951			32,692,669
Less anti-dilutive common stock equivalents		(8,177,995	)		(17,391,313	)		(9,159,532	)		(17,442,285	)
Weighted average common shares outstanding - diluted		24,397,327			15,209,891			23,418,419			15,250,384

5. Long-Term Debt

The following table summarizes long-term debt (in thousands):

	September 30,			December 31,
	2009			2008
Term (formerly construction) loans	$	195,387		$	181,150
Subordinated debt		20,075			20,595
Working capital loans		20,000			17,000
Notes payable		16,430			16,709
Capital leases		2,540			2,485
		254,432			237,939
Less current portion		(33,647	)		(11,588	)
Long term portion	$	220,785		$	226,351

In September 2006, the Operating Subsidiaries entered into a Senior Secured Credit Facility providing for the availability of $230.0 million of borrowings (“Senior Debt”) with BNP Paribas and a syndicate of lenders to finance construction and operation of the Wood River and Fairmont plants.  The Senior Debt initially consisted of two construction loans, which together totaled $210.0 million of available borrowings, and working capital loans of up to $20.0 million.  No principal payments were required until the construction loans were converted to term loans.  Thereafter, principal payments are payable quarterly at a minimum amount of $3,150,000, with additional pre-payments to be made out of available cash flow.  The Operating Subsidiaries received a Notice of Default from the lenders, dated May 22, 2009, asserting that a “material adverse effect” had occurred due to the Company’s lack of liquidity.  The Company disagreed with the lenders assertion that a material adverse effect had occurred and, beginning on May 28, 2009, entered into a series of consent agreements with its lenders granting the Operating Subsidiaries limited access to its bank accounts as it continued discussions with the lenders relating to the asserted events of default and conversion of the construction loans to term loans.  Effective September 29, 2009, the Operating Subsidiaries entered into a Waiver and Amendment to the Senior Debt which converted the two construction loans to two term loans and waived all defaults previously asserted by the lenders.  At conversion, the Waiver and Amendment to the Senior Debt provided for $198.6 million of total funded debt under the term loans.  Following the conversion, the Operating Subsidiaries made their first principal payment on September 30, 2009 of $3.2 million which resulted in $195.4 million in term loans outstanding as of September 30, 2009.  The Waiver and Amendment to the Senior Debt also provides for up to $9.7 million in additional loans to make future principal and interest payments under the Senior Debt facility.  These term loans mature in September 2014.

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Senior Debt also includes working capital loans of up to $20.0 million, a portion of which may be used as letters of credit. The working capital loans mature in September 2010, and as a result the entire outstanding amount of such loans was classified as current as of September 30, 2009.  However, with consent from two-thirds of the lenders, the maturity date of the working capital loans may be extended to September 2011.  Interest rates on Senior Debt (term loans and working capital loans) are, at management’s option, set at: i)  a base rate, which is the higher of the federal funds rate plus 0.5% or BNP Paribas’ prime rate, in each case plus a margin of 2.0%; or ii) at LIBOR plus 3.0%.  Interest on base rate loans is payable quarterly and, depending on the LIBOR rate elected, as frequently as monthly on LIBOR loans, but no less frequently than quarterly.  The weighted average interest rate in effect on the borrowings at September 30, 2009 was 3.3%.  Neither the Company nor the LLC is a borrower under the Senior Debt, although the equity interests and assets of our subsidiaries are pledged as collateral to secure the debt under the facility.

While we have borrowed substantial amounts under our Senior Debt facility, additional borrowings remain subject to the satisfaction of a number of additional conditions precedent, including continuing compliance with debt covenants and payment of principal and interest when due.  The Senior Debt is secured by a first lien on all rights, titles and interests in the Wood River and Fairmont plants and any accounts receivable or property associated with those plants.  The Company has established collateral deposit accounts maintained by an agent of the banks, into which our revenues are deposited.  These funds are then allocated into various sweep accounts held by the collateral agent, with the remaining cash, if any, to be distributed to the Company each month.  The sweep accounts have various provisions, including an interest coverage ratio and debt service reserve requirements, which restrict the amount of cash that is made available to the Company each month. The terms of the Senior Debt include certain limitations on, among other things, the ability of the Operating Subsidiaries to incur additional debt, grant liens or encumbrances, declare or pay dividends or distributions, conduct asset sales or other dispositions, merge or consolidate, conduct transactions with affiliates and amend, modify or change the scope of the Wood River and Fairmont construction projects, the project agreements or the budgets relating to them.  The terms of the Senior Debt also contain customary events of default including failure to meet payment obligations, failure to pay financial obligations, failure of the LLC to remain solvent and failure to obtain or maintain required governmental approvals.

As of September 30, 2009, the Company’s subsidiaries had $215.4 million outstanding under the Senior Debt facility, which included $195.4 million of outstanding term loans and $20.0 million of outstanding working capital loans.

A quarterly commitment fee of 0.50% per annum on the unused portion of available Senior Debt is payable.  Debt issuance fees and expenses of approximately $8.5 million ($5.2 million, net of accumulated amortization) have been incurred in connection with the Senior Debt at September 30, 2009.  These costs have been deferred and are being amortized over the term of the Senior Debt, although the amortization of debt issuance costs during the period of construction through August 2008 were capitalized as part of the cost of the constructed assets.

In September 2006, the LLC entered into a loan agreement with certain Class A unitholders (“Sub Lenders”) providing for up to $50.0 million of loans (“Subordinated Debt”) to be used for general corporate purposes including construction of the Wood River and Fairmont plants.  The Subordinated Debt must be repaid by no later than March 2015.  Interest on Subordinated Debt was payable quarterly in arrears at a 15.0% annual rate.  The LLC did not make the scheduled quarterly interest payments that were due on September 30, 2008 and December 31, 2008.  Under the terms of the Subordinated Debt, the failure to pay interest when due is an event of default.  In January 2009, the LLC and the Sub Lenders entered into a waiver and amendment agreement to the loan agreement (“Waiver and Amendment”).  Under the Waiver and Amendment, an initial payment of $2.0 million, which was made on January 16, 2009, was made to pay the $767,000 of accrued interest due September 30, 2008 and to reduce outstanding principal by $1,233,000.  Effective upon the $2.0 million initial payment, the Sub Lenders waived the defaults and any associated penalty interest relating to the LLC’s failure to make the September 30, 2008 and the December 31, 2008 quarterly interest payments.  Effective December 1, 2008, interest on the Subordinated Debt began accruing at a 5.0% annual rate compounded quarterly, a rate that will apply until the debt with Cargill (under an agreement entered into simultaneously) has been paid in full, at which time the rate will revert to a 15.0% annual rate and quarterly payments in arrears are required.  As long as the debt with Cargill remains outstanding, future payments to the Sub Lenders are contingent upon available cash received by the LLC, as defined in the Waiver and Amendment.  The Subordinated Debt is secured by theequity of the subsidiaries of the LLC owning the Wood River and Fairmont plant sites and fully and unconditionally guaranteed by those subsidiaries, which guarantees are subordinated to the obligations of the subsidiaries under our Senior Debt facility.  A default under our Senior Debt would also constitute a default under our Subordinated Debt and would entitle the lenders to accelerate the repayment of amounts outstanding.  The receipt by the Company of the Notice of Default dated May 22, 2009, from the lenders under the Senior Debt facility constituted an event of default under the Subordinated Debt.  The Sub Lenders did not elect to exercise any of the rights and remedies available to them as a result of the Notice of Default under the Senior Debt facility, and did not declare or otherwise provide a notice of acceleration.  Since all of the asserted events of default under the Senior Debt facility were waived by the lenders under that facility on September 29, 2009, there is no longer an event of default under the Subordinated Debt.

Debt issuance fees and expenses of approximately $5.5 million ($1.5 million, net of accumulated amortization) have been incurred in connection with the Subordinated Debt at September 30, 2009.  Debt issuance costs associated with the Subordinated Debt are being deferred and amortized over the term of the agreement, although the amortization of debt issuance costs during the period of construction through August 2008 were capitalized as part of the cost of the constructed assets.  All $50.0 million available under the Subordinated Debt was borrowed in the first six months of 2007.  During the third quarter of 2007, the Company retired $30.0 million of its Subordinated Debt with a portion of the proceeds from the initial public offering of the Company’s stock.  This resulted in accelerated amortization of debt issuance fees of approximately $3.1 million in 2007, which represents the pro rata share of the retired debt.

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In January 2009, the LLC and Cargill entered into an agreement (“Cargill Agreement”) which finalized the payment terms for $17.4 million owed to Cargill (“Cargill Debt”) by the LLC related to hedging losses with respect to corn hedging contracts that had been liquidated in the third quarter of 2008.  See Note 8 — Derivative Financial Instruments.  The Cargill Agreement required an initial payment of $3.0 million on the outstanding balance, which was paid on December 5, 2008.  Upon the initial payment of $3.0 million, Cargill also forgave $3.0 million.  Effective December 1, 2008, interest on the Cargill Debt began accruing at a 5.0% annual rate compounded quarterly.  Future payments to Cargill of both principal and interest are contingent upon available cash received by the LLC, as defined in the Cargill Agreement.  Cargill will forgive, on a dollar for dollar basis a further $2.8 million as it receives the next $2.8 million of principal payments.  The Cargill Debt is being accounted for as a troubled debt restructuring.  As the future cash payments specified by the terms of the Cargill Agreement exceed the carrying amount of the debt before the $3.0 million was forgiven, the carrying amount of the debt is not reduced and no gain is recorded.  As future payments are made, the LLC will determine, based on the timing of payments, whether or not any gain should be recorded.

The Company had three letters of credit for a total of approximately $1.9 million outstanding as of September 30, 2009.  These letters of credit have been provided as collateral to the natural gas provider at the Fairmont plant and the electrical service providers at both the Fairmont and Wood River plants, and are all secured by certificates of deposit in the respective amounts.

The LLC, through its subsidiary that constructed the Fairmont plant, has entered into an agreement with the local utility pursuant to which the utility has built and owns and operates a substation and distribution facility in order to supply electricity to the plant.  The LLC is paying a fixed facilities charge based on the cost of the substation and distribution facility of $34,000 per month, over the 30-year term of the agreement.  This fixed facilities charge is being accounted for as a capital lease in the accompanying financial statements.  The agreement also includes a $25,000 monthly minimum energy charge, which also began in the first quarter of 2008.

Notes payable relate to certain financing agreements in place at each of our sites, as well as the Cargill Debt.  The subsidiaries of the LLC that constructed the plants entered into financing agreements in the first quarter of 2008 for the purchase of certain rolling stock equipment to be used at the facilities for $748,000.  The notes have fixed interest rates (weighted average rate of approximately 5.6%) and require 48 monthly payments of principal and interest, maturing in the first and second quarter of 2012.  In addition, the subsidiary of the LLC that constructed the Wood River facility has entered into a note payable for $2,220,000 with a fixed interest rate of 11.8% for the purchase of our natural gas pipeline. The note requires 36 monthly payments of principal and interest and matures in the first quarter of 2011.  In addition, the subsidiary of the LLC that constructed the Wood River facility has entered in a note payable for $419,000 with the City of Wood River for special assessments related to street, water, and sanitary improvements at our Wood River facility.  This note requires 10 annual payments of $58,000, including interest at 6.5%, and  matures in 2018.

The following table summarizes the aggregate maturities of our long term debt as of September 30, 2009 (in thousands):

Remainder of 2009	$	3,387
2010		33,674
2011		12,997
2012		12,706
2013		12,647
Thereafter		179,021
Total	$	254,432

6. Tax Increment Financing

In February 2007, the subsidiary of the LLC that constructed the Wood River plant received $6.0 million from the proceeds of a tax increment revenue note issued by the City of Wood River, Nebraska.  The proceeds funded improvements to property owned by the subsidiary.  The City of Wood River will pay the principal and interest of the note from the incremental increase in the property taxes related to the improvements made to the property.  The interest rate on the note is 7.85%.  The proceeds have been recorded as a liability and will be reduced as the subsidiary remits property taxes to the City of Wood River, beginning in 2008 and continuing for approximately 13 years.

The LLC has guaranteed the principal and interest of the tax increment revenue note if, for any reason, the City of Wood River fails to make the required payments to the holder of the note.

On June 15, 2008, December 15, 2008, and June 15, 2009 the first three principal payments on the note were made.  Due to delays in the plant construction, property taxes on the plant in 2008 and the first half of 2009 were lower than anticipated and therefore, the LLC was required to pay $760,000 in 2008 and $228,000 in 2009 as a portion of the note payments.

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The following table summarizes the aggregate maturities of the tax increment financing debt as of September 30, 2009 (in thousands):

Remainder of 2009	$	290
2010		318
2011		343
2012		370
2013		399
Thereafter		4,318
Total	$	6,038

7. Stockholders’ Equity

On October 15, 2007, the Company announced the adoption of a stock repurchase plan authorizing the repurchase of up to $7.5 million of the Company’s common stock.  Purchases will be funded out of cash on hand and made from time to time in the open market.  From the inception of the buyback program through September 30, 2009, the Company had repurchased 809,606 shares at an average price of $5.30 per share, leaving $3,184,000 available under the repurchase plan.  The shares repurchased are being held as treasury stock.

The Company has not declared any dividends on its common stock and does not anticipate paying dividends in the foreseeable future.  In addition, the terms of the Senior Debt contain restrictions on the ability of the LLC to pay dividends or other distributions, which will restrict the Company’s ability to pay dividends in the future.

8. Derivative Financial Instruments

On January 1, 2009, the Company adopted new disclosure requirements related to its derivative financial instruments.  The adoption of these new requirements had no financial impact on our consolidated financial statements and only required additional financial statement disclosures.  We have applied these requirements on a prospective basis.  Accordingly, disclosure related to interim periods prior to the date of adoption have not been presented.

We use interest rate swaps to manage the economic effect of variable interest obligations associated with our floating rate Senior Debt facility so that the interest payable on a portion of the principal value of the Senior Debt facility effectively becomes fixed at a certain rate, thereby reducing the impact of future interest rate changes on our future interest expense. The unrealized losses on these interest rate swaps are included in accumulated other comprehensive income (loss) and the corresponding fair value liabilities are included in the current portion of derivative financial instrument liability in our consolidated balance sheet.  The monthly interest settlements are reclassified from other comprehensive income (loss) to interest expense as they are settled each month.  The full amount of accumulated other comprehensive income (loss) at September 30, 2009 related to these interest rate swaps will be reclassified to the statement of operations over the next twelve months as they expire.  See Note 5 for further discussion of interest rates on the Senior Debt facility.

In September 2007, the LLC, through its subsidiary, entered into an interest rate swap for a two-year period that has been designated as a hedge of cash flows related to the interest payments on the underlying debt.  The contract was for $60.0 million principal with a fixed interest rate of 4.65%, payable by the subsidiary and the variable interest rate, the one-month LIBOR, payable by the third party.  The difference between the subsidiary’s fixed rate of 4.65% and the one-month LIBOR rate, which is reset every 30 days, is received or paid every 30 days in arrears.  The interest rate swap expired in September 2009, and therefore, there is no fair value for this swap on the consolidated balance sheet at September 30, 2009.  The LLC made payments under this swap arrangement for the three and nine month periods ended September 30, 2009, totaling $670,000, and $1,941,000, respectively, and for the three and nine month periods ended September 30, 2008, totaling $334,000 and $758,000, respectively.  These payments were included in the amounts capitalized as part of construction in progress through the end of August 2008.  After September 1, 2008 these amounts were included in interest expense.

In March 2008, the LLC, through its subsidiary, entered into a second interest rate swap for a two-year period that has been designated as a hedge of cash flows related to the interest payments on the underlying debt.  The contract is for $50.0 million principal with a fixed interest rate of 2.766%, payable by the subsidiary and the variable interest rate, the one-month LIBOR, payable by the third party.  The difference between the subsidiary’s fixed rate of 2.766% and the one-month LIBOR rate, which is reset every 30 days, is received or paid every 30 days in arrears.  The fair value of this swap ($619,000) has been recorded as a derivative financial instrument liability and in accumulated other comprehensive income on the consolidated balance sheet at September 30, 2009.  The LLC made net payments under this swap arrangement for the three and nine month periods ended September 30, 2009 totaling $318,000, and $900,000, respectively, and for the three and nine month periods ended September 30, 2008 totaling $38,000 and $39,000, respectively.  These payments were included in the amounts capitalized as part of construction in progress through the end of August 2008.  After September 1, 2008 these amounts were included in interest expense.

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During the second quarter of 2008, the LLC entered into various derivative instruments with Cargill in order to manage exposure to commodity prices for corn and ethanol, generally through the use of futures, swaps, and option contracts.  During August 2008, the market price of corn declined sharply, exposing the LLC to large losses and significant unmet margin calls under those contracts.  Cargill began liquidating the hedge contracts in August 2008 and by September 30, 2008 the LLC was no longer a party to any hedge contracts for any of its commodities.  The Company recorded $39.9 million in losses during the nine months ended September 30, 2008 resulting from the liquidation of its hedge contracts.  As of December 31, 2008, the LLC had converted its payable with Cargill relating to its hedging contract losses into a note payable.  See further discussion of the Cargill Debt in Note 5 — Long Term Debt.

The effects of derivative instruments on our consolidated financial statements were as follows as of September 30, 2009 and for the three and nine months then ended (amounts presented exclude any income tax effects and have not been adjusted for the amount attributable to the noncontrolling interest):

Fair Value of Derivative Instruments in Consolidated Balance Sheet

	September 30, 2009
(In thousands)	Balance Sheet Location	Fair Value
Cash flow hedges:
Interest rate swap agreements designated as cash flow hedges	Current portion of derivative financial instrument liability	$	(619	)

Effects of Derivative Instruments on Income and Other Comprehensive Income (Loss)

	Amount of Gain (Loss) recognized in Accumulated OCI on Derivative (effective Portion)			Amount of Gain (Loss) recognized in Accumulated OCI on Derivative (effective Portion)			Amount and Location of Gain (Loss) Rec lassified from Accumulated OCI into Income (effective Portion)							Amount and Location of Gain (Loss) Recognized in Income on Derivative (Ineffective Portion and Amount Excluded from Effectiveness Testing)
	Three Months Ended			Nine Months Ended			Three Months Ended			Nine Months Ended				Three and Nine Months Ended
(In thousands)	September 30, 2009			September 30, 2009			September 30, 2009			September 30, 2009				September 30, 2009
Cash flow hedges:
Interest Rate Swaps	$	(141	)	$	(720	)	$	(988	)	$	(2,842	)	Interest expense	$	—	Other non-operating income

Effective January 1, 2008, the Company adopted the provisions of FASB ASC 820, Fair Value Measurements and Disclosures.  FASB ASC 820 defines and establishes a framework for measuring fair value and expands disclosures about fair value measurements.  In accordance with these provisions, we have categorized our financial assets and liabilities, based on the priority of the inputs to the valuation technique, into a three-level fair value hierarchy as set forth below.  If the inputs used to measure the financial instruments fall within different levels of the hierarchy, the categorization is based on the lowest level input that is significant to the fair value measurement of the instrument.

Financial assets and liabilities recorded on the Company’s consolidated balance sheets are categorized based on the inputs to the valuation techniques as follows:

Level 1 — Financial assets and liabilities whose values are based on unadjusted quoted prices for identical assets or liabilities in an active market that the company has the ability to access at the measurement date. We currently do not have any Level 1 financial assets or liabilities.

Level 2 — Financial assets and liabilities whose values are based on quoted prices in markets where trading occurs infrequently or whose values are based on quoted prices of instruments with similar attributes in active markets.  Level 2 inputs include the following:

· Quoted prices for identical or similar assets or liabilities in non-active markets (examples include corporate and municipal bonds which trade infrequently);

· Inputs other than quoted prices that are observable for substantially the full term of the asset or liability (examples include interest rate and currency swaps); and

· Inputs that are derived principally from or corroborated by observable market data for substantially the full term of the asset or liability (examples include certain securities and derivatives).

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Level 3 — Financial assets and liabilities whose values are based on prices or valuation techniques that require inputs that are both unobservable and significant to the overall fair value measurement.  These inputs reflect management’s own assumptions about the assumptions a market participant would use in pricing the asset or liability.  We currently do not have any Level 3 financial assets or liabilities.

(in thousands)	September 30,
Level 2	2009
Financial Liabilities:
Interest rate swaps	$	(619	)
Total liabilities	$	(619	)
Total net position	$	(619	)

The fair value of our interest rate swaps are primarily based on the LIBOR index.

9. Stock-Based Compensation

The following table summarizes the stock based compensation incurred by the Company and the LLC:

	Three Months Ended,				Nine Months Ended,
(In thousands)	September 30, 2009		September 30, 2008		September 30, 2009		September 30, 2008
Stock options	$	64	$	—	$	190	$	340
Restricted stock		3		—		94		181
Total	$	67	$	—	$	284	$	521

2007 Equity Incentive Compensation Plan

Immediately prior to the Company’s initial public offering, the Company adopted the 2007 Equity Incentive Compensation Plan (“2007 Plan”).  The 2007 Plan provides for the grant of options intended to qualify as incentive stock options, non-qualified stock options, stock appreciation rights or restricted stock awards and any other equity-based or equity related awards.  The 2007 Plan is administered by the Compensation Committee of the Board of Directors.  Subject to adjustment for changes in capitalization, the aggregate number of shares that may be delivered pursuant to awards under the 2007 Plan is 3,000,000 and the term of the Plan is ten years, expiring in June 2017.

Stock Options — Except as otherwise directed by the Compensation Committee, the exercise price for options cannot be less than the fair market value of our common stock on the grant date.  Other than the stock options issued to Directors, the options will generally vest and become exercisable with respect to 30%, 30% and 40% of the shares of our common stock subject to such options on each of the first three anniversaries of the grant date.  Compensation expense related to these options is expensed on a straight line basis over the 3 year vesting period.  Options issued to Directors generally vest and become exercisable on the first anniversary of the grant date. All stock options have a five year term from the date of grant.

During the three and nine months ended September 30, 2009, the Company issued 0 and 30,000 stock options, respectively under the 2007 Plan to certain of our non-employee Directors with a per share exercise price equal to the market price of the stock on the date of grant.  During the three and nine months ended September 30, 2008 the Company issued 0 and 299,025 stock options, respectively, under the 2007 Plan to certain of our employees and non-employee Directors with a per share exercise price equal to the market price of the stock on the date of grant.  The determination of the fair value of the stock option awards, using the Black-Scholes model, incorporated the assumptions in the following table for stock options granted during the three and nine months ended September 30, 2009 and the three and nine months ended September 30, 2008.   The risk-free rate is based on the U.S. Treasury yield curve in effect at the time of grant over the expected term.  Expected volatility is calculated by considering, among other things, the expected volatilities of public companies engaged in the ethanol industry.  Due to the lack of historical experience in 2008, the expected option term in 2008 is calculated using the “simplified” method.

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The weighted average variables used in calculating fair value for options issued during the three and nine months ended September 30, 2009 and 2008 are as follows:

	Three Months Ended						Nine Months Ended
	September 30, 2009			September 30, 2008			September 30, 2009			September 30, 2008
Expected stock price volatility		n/a	%		n/a	%		191	%		58	%
Expected life (in years)		n/a			n/a			3.6			3.6
Risk-free interest rate		n/a	%		n/a	%		2.16	%		2.70	%
Expected dividend yield		n/a	%		n/a	%		0.00	%		0.00	%
Expected forfeiture rate		n/a	%		n/a	%		35.00	%		35.00	%
Weighted average grant date fair value	$	n/a		$	n/a		$	0.68		$	2.32

A summary of the status of outstanding stock options at September 30, 2009 and the changes during the nine months ended September 30, 2009 is as follows:

				Weighted		Weighted				Unrecognized
				Average		Average		Aggregate		Remaining
				Exercise		Remaining		Intrinsic		Compensation
	Shares			Price		Life (years)		Value		Expense
Options outstanding, January 1, 2009		557,700		$	7.75
Granted		30,000			0.73
Exercised		—			—
Forfeited		(256,570	)		8.57
Options outstanding, September 30, 2009		331,130		$	6.48		3.3	$	—
Options vested or expected to vest at September 30, 2009		278,339		$	6.65		3.3	$	—	$	214,577
Options exercisable, September 30, 2009		163,194		$	7.36		3.2	$	—

Based on the Company’s closing common stock price of $0.68 on September 30, 2009, there was no intrinsic value related to any stock options outstanding.

Restricted Stock - In the nine months ended September 30, 2009, the Company granted 15,000 shares to its non-employee directors.  The shares vest 100% on the first anniversary of the grant date.

A summary of the restricted stock activity during the nine months ended September 30, 2009 is as follows:

				Weighted
				Average				Unrecognized
				Grant Date		Aggregate		Remaining
				Fair Value		Intrinsic		Compensation
	Shares			per Award		Value		Expense
Restricted stock outstanding, January 1, 2009		76,307		$	8.32
Granted		15,000			0.73
Vested		(31,787	)		5.82
Cancelled or expired		(30,956	)		9.94
Restricted stock outstanding, September 30, 2009		28,564		$	5.37	$	19,424
Restricted stock expected to vest at September 30, 2009		19,635		$	4.82	$	13,352	$	91,670

The Company recorded $67,000 and $284,000 of non-cash compensation expense during the three and nine months ended September 30, 2009, respectively, relating to stock options and restricted stock.  During the three and nine months ended September 30, 2008, the company recorded $352 and $521,000, respectively, of non-cash compensation expense relating to stock options and restricted stock.  Compensation expense was determined based on the fair value of each award type at the grant date and is recognized on a straight line basis over their respective vesting periods.  The remaining unrecognized option and restricted stock expense will be recognized over 1.1 and 1.7 years, respectively.  After considering the stock option and restricted stock awards issued and outstanding, net of forfeitures, the Company had 2,571,442 shares of common stock available for future grant under our 2007 Plan at September 30, 2009.

10. Income Taxes

The Company has not recognized any income tax provision (benefit) for the three and nine months ended September 30, 2009, and September 30, 2008.  At September 30, 2009 and December 31, 2008, the Company recognized a tax receivable of $279,000 and $305,000, respectively, related to expected tax refunds.

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The U.S. statutory federal income tax rate is reconciled to the Company’s effective income tax rate as follows:

	Three Months Ended,						Nine Months Ended,
	September 30, 2009			September 30, 2008			September 30, 2009			September 30, 2008
Statutory U.S. federal income tax rate		(34.0	)%		(34.0	)%		(34.0	)%		(34.0	)%
Expected state tax benefit, net		(3.6	)%		(3.6	)%		(3.6	)%		(3.6	)%
Valuation allowance		37.6	%		37.6	%		37.6	%		37.6	%
		0.0	%		0.0	%		0.0	%		0.0	%

The effects of temporary differences and other items that give rise to deferred tax assets and liabilities are presented below (in thousands).

	September 30,			December 31,
	2009			2008
Deferred tax assets:
Capitalized start up costs	$	4,016		$	4,528
Net unrealized loss on derivatives		174			712
Net operating loss carryover		41,697			20,993
Other		796			779
Deferred tax asset		46,683			27,012
Valuation allowance		(25,326	)		(18,412	)
Deferred tax liabilities:
Property, plant and equipment		(21,357	)		(8,600	)
Deferred tax liabilities		(21,357	)		(8,600	)
Net deferred tax asset	$	—		$	—
Current tax receivable	$	279		$	305
Increase in valuation allowance	$	6,914

The Company assesses the recoverability of deferred tax assets and the need for a valuation allowance on an ongoing basis.  In making this assessment, management considers all available positive and negative evidence to determine whether it is more likely than not that some portion or all of the deferred tax assets will be realized in future periods.  This assessment requires significant judgment and estimates involving current and deferred income taxes, tax attributes relating to the interpretation of various tax laws, historical bases of tax attributes associated with certain assets and limitations surrounding the realization of deferred tax assets.

As of September 30, 2009, the net operating loss carryforward is $111.0 million, which will begin to expire if not used by December 31, 2028.  The U.S. federal statute of limitations remains open for our 2006 and subsequent tax years.

11. Employee Benefit Plans

Deferred Compensation Plan

The Company maintains a deferred compensation plan.  The plan is available to executive officers of the Company and certain key managers of the Company as designated by the Board of Directors or its Compensation Committee. The plan allows participants to defer all or a portion of their salary and annual bonuses.  The Company may make discretionary matching contributions of a percentage of the participant’s salary deferral and those assets are invested in instruments as directed by the participant.  The deferred compensation plan does not have dollar limits on tax-deferred contributions.  The assets of the deferred compensation plan are held in a “rabbi trust” and, therefore, may be available to satisfy the claims of the Company’s creditors in the event of bankruptcy or insolvency.  Participants may direct the plan administrator to invest their salary and bonus deferrals into pre-approved mutual funds held by the trust or other investments approved by the Board.  In addition, each participant may request that the plan administrator re-allocate the portfolio of investments in the participant’s individual account within the trust.  However, the plan administrator is not required to honor such requests.  Matching contributions, if any, will be made in cash and vest ratably over a three-year period.  Assets of the trust are invested in over ten mutual funds that cover an investment spectrum ranging from equities to money market instruments.  These mutual funds are publicly quoted and reported at market value.  No funds were contributed to the plan in the three or nine months ended September 30, 2009.  Approximately $28,000 of employee deferrals was contributed to the plan in the three and nine months ended September 30, 2008.  These funds incurred a gain in value of $6,200, and $9,800 in the three and nine months ended September 30, 2009 and a loss in value of $5,900 and $11,600 in the three and nine months ended September 30, 2008, respectively.  These deferrals have been recorded as other assets and other non-current liabilities on the consolidated balance sheet at September 30, 2009 and December 31, 2008.

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401(k) Plan

The LLC sponsors a 401(k) profit sharing and savings plan for its employees.  Employee participation in this plan is voluntary.  Contributions to the plan by the LLC are discretionary.  There were no contributions by the LLC to the plan for the three and nine months ended September 30, 2009 or 2008.

12. Commitments and Contingencies

The LLC, through its subsidiaries, entered into two operating lease agreements with Cargill.  Cargill’s grain handling and storage facilities, located adjacent to the Wood River and Fairmont plants, are being leased for 20 years, which began in September 2008 for both plants.  Minimum annual payments are $800,000 for the Fairmont plant and $1,000,000 for the Wood River plant so long as the associated corn supply agreements with Cargill remain in effect.  Should the Company not maintain its corn supply agreements with Cargill, the minimum annual payments under each lease increase to $1,200,000 and $1,500,000, respectively.  The leases contain escalation clauses which are based on the percentage change in the Midwest Consumer Price Index.  The escalation clauses are considered to be contingent rent and, accordingly, are not included in minimum lease payments.  Rent expense is recognized on a straight line basis over the terms of the leases.  Events of default under the leases include failure to fulfill monetary or non-monetary obligations and insolvency.  Effective September 1, 2009, the subsidiaries and Cargill entered into Omnibus Agreements whereby the two operating lease agreements were modified, for a period of one year, to defer a portion of the monthly lease payments.  The deferred lease payments will be payable to Cargill over a two year period beginning September 1, 2010.

Subsidiaries of the LLC entered into agreements to lease a total of 875 railroad cars.  Pursuant to these lease agreements, which began in the second quarter of 2008, these subsidiaries will pay an average of approximately $7.4 million per year for ten years.  Monthly rental charges escalate if modifications of the cars are required by governmental authorities or mileage exceeds 30,000 miles in any calendar year.  Rent expense is recognized on a straight line basis over the terms of the leases.  Events of default under the leases include failure to fulfill monetary or non-monetary obligations and insolvency.

In April 2008, the LLC entered into a five year lease that began July 1, 2008 for office space for its corporate headquarters.  Rent expense is being recognized on a straight line basis over the term of the lease.

Future minimum operating lease payments at September 30, 2009 are as follows (in thousands):

Remainder of 2009	$	1,776
2010	9,427
2011	10,461
2012	10,036
2013	9,464
Thereafter	58,536
Total	$	99,700

Rent expense recorded for the three and nine month periods ended September 30, 2009 totaled $2,366,000 and $7,080,000, respectively, and for the three and nine month periods ended September 30, 2008 totaled $1,586,000 and $4,166,000, respectively.

The LLC, through its subsidiaries that constructed the Wood River and Fairmont plants, has entered into agreements with electric utilities pursuant to which the electric utilities built, own and operate substation and distribution facilities in order to supply electricity to the plants.  For its Wood River plant, the LLC paid the utility $1.5 million for the cost of the substation and distribution facility, which was recorded as property, plant and equipment.  The balance of the utilities direct capital costs is being recovered from monthly demand charges of approximately $124,000 per month for three years which began in the second quarter of 2008.

Subsidiaries of the LLC entered into engineering, procurement and construction (“EPC”) contracts with The Industrial Company — Wyoming (“TIC”) for the construction of the Wood River and Fairmont plants.  Pursuant to these EPC contracts, TIC was to be paid a total of $272.0 million, subject to certain adjustments, for the turnkey construction of the two plants.  As part of the EPC contracts, the subsidiaries of the LLC were permitted to withhold approximately 5% of progress payments billed by TIC as retainage, payable upon substantial completion of the plants.  The subsidiaries of the LLC entered into settlement agreements with TIC, effective December 11, 2008, that settled certain outstanding issues between the parties under the terms of the EPC contracts.  Among the items agreed to were that each plant had met both substantial completion and project completion, that TIC would continue to be responsible for its warranty obligations, and that TIC would pay the subsidiaries of the LLC $2.0 million for each plant, which amounts would be deducted from the retainage amounts owed to TIC.  The construction retainage in the consolidated balance sheets at December 31, 2008 of $9.4 million was recorded net of the $2.0 million for each plant owed by TIC as part of the settlement agreement.  The $9.4 million of construction retainage was paid to TIC in February 2009.  At September 30, 2009 and December 31, 2008, property, plant and equipment related to the EPC contracts totaled $248.9 million, which was recorded net of liquidated damages of $19.1 million arising out of completion delays at both plants and net of $4.0 million arising out of the settlement agreements.

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Pursuant to long-term agreements, Cargill is the exclusive supplier of corn to the Wood River and Fairmont plants for twenty years commencing September 2008.  The price of corn purchased under these agreements is based on a formula including cost plus an origination fee of $0.045 per bushel.  The minimum annual origination fee payable to Cargill per plant under the agreements is $1.2 million.  The agreements contain events of default that include failure to pay, willful misconduct, purchase of corn from another supplier, insolvency or the termination of the associated grain facility lease.  Effective September 1, 2009, the subsidiaries and Cargill entered into Omnibus Agreements whereby the two corn supply agreements were modified, for a period of one year, extending payment terms for our corn purchases which payment terms will revert back to the original terms on September 1, 2010.

At September 30, 2009, the LLC had committed, through its subsidiaries, to purchase 879,000 bushels of corn to be delivered between October 2009 and October 2010 at our Fairmont location, and 1,733,000 bushels of corn to be delivered between October 2009 and March 2011 at our Wood River location.  These purchase commitments represent 2% and 3% of the projected corn requirements during those periods for Fairmont and Wood River, respectively.  The purchase price of the corn will be determined at the time of delivery.  These normal purchase commitments are not marked to market or recorded in the consolidated balance sheet.

Cargill has agreed to market all ethanol and distillers grain produced at the Wood River and Fairmont plants through September 2016.  Under the terms of the ethanol marketing agreements, the Wood River and Fairmont plants will generally participate in a marketing pool where all parties receive the same net price.  That price will be the average delivered price per gallon received by the marketing pool less average transportation and storage charges and less a 1% commission.  In certain circumstances, the plants may elect not to participate in the marketing pool.  Minimum annual commissions are payable to Cargill and represent 1% of Cargill’s average selling price for 82.5 million gallons of ethanol from each plant. Under the distillers grain marketing agreements, the Wood River and Fairmont plants will receive the market value at time of sale less a commission. Minimum annual commissions are payable to Cargill and range from $500,000 to $700,000 depending upon certain factors as specified in the agreement. The marketing agreements contain events of default that include failure to pay, willful misconduct and insolvency.  Effective September 1, 2009, the subsidiaries and Cargill entered into Omnibus Agreements whereby the two ethanol marketing agreements were modified, for a period of one year, to defer a portion of the monthly ethanol commission payments.  The deferred commission payments will be payable to Cargill over a two year period beginning September 1, 2010.

The Company is not currently a party to any material legal, administrative or regulatory proceedings that have arisen in the ordinary course of business or otherwise that would result in loss contingencies.

13. Noncontrolling Interest

We have retrospectively applied the presentation requirements of FASB ASC 810 in our consolidated financial statements.  Noncontrolling interest consists of equity issued to members of the LLC.  Under its original LLC agreement, the LLC was authorized to issue 9,357,500 Class A, 950,000 Class B, 425,000 Class M, 2,683,125 Class C and 894,375 Class D Units. Class M, C and D Units were considered “profits interests” for which no cash consideration was received upon issuance. In accordance with the LLC agreement, all classes of the LLC’s equity units were converted to one class of LLC equity upon the Company’s initial public offering in June 2007. As provided in the LLC agreement, the exchange ratio of the various existing classes of equity for the single class of equity was based on the Company’s initial public offering price of $10.50 per share and the resulting implied valuation of the Company. The exchange resulted in the issuance of 17,957,896 LLC membership units and Class B common shares.  Each LLC membership unit combined with a share of Class B common stock is exchangeable at the holder’s option into one share of Company common stock. The LLC may make distributions to members as determined by the Company.

Exchange of LLC Units

LLC membership units, when combined with the Class B shares, can be exchanged for newly issued shares of common stock of the Company on a one-for-one basis.  The following table summarizes the exchange activity since the Company’s initial public offering:

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LLC Membership Units and Class B common shares outstanding at initial public offering, June 2007	17,957,896
LLC Membership Units and Class B common shares exchanged in 2007	(561,210	)
LLC Membership Units and Class B common shares exchanged in 2008	(7,314,438	)
LLC Membership Units and Class B common shares exchanged in 2009	(1,932,817	)
Remaining LLC Membership Units and Class B shares at September 30, 2009	8,149,431

At the time of its initial public offering, the Company owned 28.9% of the LLC membership units of the LLC. At September 30, 2009, the Company owned 75.0% of the LLC membership units. The noncontrolling interest will continue to be reported until all Class B common shares and LLC membership units have been exchanged into the Company’s common stock.

The exchanges of LLC membership units for common stock prior to January 1, 2009 were accounted for as acquisitions of minority interests in accordance with FASB ASC 805, Business Combinations.  Under FASB ASC 805, the common stock was recorded based on the market value at the date of issuance while minority interest was eliminated based on its book value at the date of the exchange with any difference between these two amounts recorded as an adjustment of the capitalized cost of  long-lived assets.  Beginning on January 1, 2009, the Company adopted the provisions FASB ASC 810, whereby all exchanges of LLC membership units for Company common stock will be accounted for as equity transactions, with any difference between the fair value of the Company’s common stock and the amount by which the noncontrolling interest is adjusted being recognized in equity.

The table below shows the effects of the changes in BioFuel Energy Corp.’s ownership interest in LLC on the equity attributable to BioFuel Energy Corp.’s common shareholders for the three and nine month periods ended September 30, 2009 and 2008 (in thousands):

Net Loss Attributable to BioFuel Energy Corp.’s common shareholders and

Transfers (to) from the Noncontrolling Interest

	Three Months Ended						Nine Months Ended
	September 30, 2009			September 30, 2008			September 30, 2009			September 30, 2008
Net income (loss) attributable to BioFuel Energy Corp.’s common shareholders	$	(6,234	)	$	(33,148	)	$	(20,478	)	$	(33,979	)
Transfers (to) from the noncontrolling interest
Increase in BioFuel Energy Corp.’s paid-in capital for issuance of common shares in exchange for Class B common shares and units of BioFuel Energy, LLC		—			—			1,794			360
Net transfers (to) from noncontrolling interest		—			—			1,794			360
Change from net income (loss) attributable to BioFuel Energy Corp.’s common shareholders and transfers (to) from noncontrolling interest	$	(6,234	)	$	(33,148	)	$	(18,684	)	$	(33,619	)

Tax Benefit Sharing Agreement

Membership units in the LLC combined with the related Class B common shares held by the historical equity investors may be exchanged in the future for shares of our common stock on a one-for-one basis, subject to customary conversion rate adjustments for stock splits, stock dividends and reclassifications.  The LLC will make an election under Section 754 of the IRS Code effective for each taxable year in which an exchange of membership interests and Class B shares for common shares occurs, which may result in an adjustment to the tax basis of the assets owned by the LLC at the time of the exchange.  Increases in tax basis, if any, would reduce the amount of tax that the Company would otherwise be required to pay in the future, although the IRS may challenge all or part of the tax basis increases, and a court could sustain such a challenge. The Company has entered into tax benefit sharing agreements with its historical LLC investors that will provide for a sharing of these tax benefits, if any, between the Company and the historical LLC equity investors. Under these agreements, the Company will make a payment to an exchanging LLC member of 85% of the amount of cash savings, if any, in U.S. federal, state and local income taxes the Company actually realizes as a result of this increase in tax basis.  The Company and its common stockholders will benefit from the remaining 15% of cash savings, if any, in income taxes realized. For purposes of the tax benefit sharing agreement, cash savings in income tax will be computed by comparing the Company’s actual income tax liability to the amount of such taxes the Company would have been required to pay had there been no increase in the tax basis in the assets of the LLC as a result of the exchanges.  The term of the tax benefit sharing agreement commenced on the Company’s initial public offering in June 2007 and will continue until all such tax benefits have been utilized or expired, unless a change of control occurs and the Company exercises its resulting right to terminate the tax benefit sharing agreement for an amount based on agreed payments remaining to be made under the agreement.

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True Up Agreement

At the time of formation of the LLC, the founders agreed with certain of our principal stockholders as to the relative ownership interests in the Company of our management members and affiliates of Greenlight Capital, Inc. (“Greenlight”) and Third Point LLC (“Third Point”). Certain management members and affiliates of Greenlight and Third Point agreed to exchange LLC membership interests, shares of common stock or cash at a future date, referred to as the “true-up date”, depending on the Company’s performance. This provision functions by providing management with additional value if the Company’s value improves and by reducing management’s interest in the Company if its value decreases, subject to a predetermined rate of return accruing to Greenlight and Third Point. In particular, if the value of the Company increases from the time of the initial public offering to the “true-up date”, the management members will be entitled to receive LLC membership units, shares of common stock or cash from the affiliates of Greenlight and Third Point. On the other hand, if the value of the Company decreases from the time of the initial public offering to the “true-up date” or if a predetermined rate of return is not met, the affiliates of Greenlight and Third Point will be entitled to receive LLC membership units or shares of common stock from the management members.

The “true-up date” will be the earlier of (1) the date on which the Greenlight and Third Point affiliates sell a number of shares of our common stock equal to or greater than the number of shares of common stock or Class B common stock received by them at the time of our initial public offering in respect of their original investment in the LLC, and (2) five years from the date of the initial public offering which is June 2012.  On the “true-up date”, the LLC’s value will be determined, based on the prices at which the Greenlight and Third Point affiliates sold shares of our common stock prior to that date, with any remaining shares (or LLC membership units exchangeable for shares) held by them deemed to have been sold at the then-current trading price. If the number of LLC membership units held by the management members at the time of the offering is greater than the number of LLC membership units the management members would have been entitled to in connection with the “true-up” valuation, the management members will be obligated to deliver to the Greenlight and Third Point affiliates a portion of their LLC membership units or an equivalent number of shares of common stock. Conversely, if the number of LLC membership units the management members held at the time of the offering is less than the number of LLC membership units the management members would have been entitled to in connection with the “true-up” valuation, the Greenlight and Third Point affiliates will be obligated to deliver, at their option, to the management members a portion of their LLC membership interests or an equivalent amount of cash or shares of common stock. In no event will any management member be required to deliver more than 50% of the membership units in the LLC, or an equivalent number of shares of common stock, held on the date of the initial public offering, provided that Mr. Thomas J.  Edelman may be required to deliver up to 100% of his LLC membership units, or an equivalent amount of cash or number of shares of common stock. No new shares will be issued as a result of the true-up. As a result there will be no impact on our public shareholders, but rather a redistribution of shares among certain members of our management group and our two largest investors, Greenlight and Third Point. This agreement was considered a modification of the awards granted to the participating management members; however, no incremental fair value was created as a result of the modification.

ITEM 2. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS

You should read the following discussion in conjunction with the unaudited consolidated financial statements and the accompanying notes included in this Quarterly Report on Form 10-Q. This discussion contains forward-looking statements that involve risks and uncertainties. Specifically, forward-looking statements may be preceded by, followed by or may include such words as “estimate”, “plan”, “project”, “forecast”, “intend”, “expect”, “is to be”, “anticipate”, “goal”, “believe”, “seek”, “target” or other similar expressions.  You are cautioned not to place undue reliance on any forward-looking statements, which speak only as of the date of this Form 10-Q, or in the case of a document incorporated by reference, as of the date of that document. Except as required by law, we undertake no obligation to publicly update or release any revisions to these forward-looking statements to reflect any events or circumstances after the date of this Form 10-Q or to reflect the occurrence of unanticipated events.  Our actual results may differ materially from those discussed in or implied by any of the forward-looking statements as a result of various factors, including but not limited to those listed elsewhere in this Form 10-Q and those listed in our Annual Report on Form 10-K for the year ended December 31, 2008 or in other documents we have filed with the Securities and Exchange Commission.

Overview

BioFuel Energy Corp. produces and sells ethanol and distillers grain through its two ethanol production facilities located in Wood River, Nebraska and Fairmont, Minnesota.  In late June 2008, we commenced start-up of commercial operations and began to produce ethanol at both of our plants, each having a nameplate capacity of 115 million gallons per year (“Mmgy”), based on the maximum amount of permitted denaturant.  During the remainder of 2008, we focused on optimizing production and streamlining operations with the goal of producing at nameplate capacity, which was achieved in December 2008.  From inception, we have worked closely with Cargill, Inc., one of the world’s leading agribusiness companies and a related party, with whom we have an extensive contractual relationship.  The two plant locations were selected primarily based on access to corn supplies, the availability of rail transportation and natural gas and Cargill’s competitive position in the area.  At each location, Cargill, has a strong local presence and owns adjacent grain storage facilities.  Cargill provides corn procurement services, markets the ethanol and distillers grain we produce and provides transportation logistics for our two plants under long-term contracts.  In addition, we lease grain storage and handling facilities adjacent to our plants from affiliates of Cargill.

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Our operations and cash flows are subject to fluctuations due to changes in commodity prices.  We may attempt to use derivative financial instruments such as futures contracts, swaps and option contracts to manage commodity prices in the future, although sufficient financial resources may not be available to us and opportunities to sell ethanol for future delivery may be significantly limited.  See “Management’s Discussion and Analysis of Financial Condition and Results of Operations — Liquidity and capital resources;—Cargill debt agreement,” and “Quantitative and Qualitative Disclosures about Market Risk,” elsewhere in this report.

We are a holding company with no operations of our own, and are the sole managing member of BioFuel Energy, LLC, or the LLC, which is itself a holding company and indirectly owns all of our operating assets.  The Company’s ethanol plants are owned and operated by the Operating Subsidiaries of the LLC.

At September 30, 2009, the Company owned 75.0% of the LLC and the remainder was owned by our founders and some of our original equity investors. As a result, the Company consolidates the results of the LLC. The amount of income or loss allocable to the 25.0% holders is reported as noncontrolling interest in our Consolidated Statements of Operations.  The Class B common shares of the Company are held by the historical equity investors of the LLC, who held 8,149,431 membership interests in the LLC that, together with the corresponding Class B shares, can be exchanged for newly issued shares of common stock of the Company on a one-for-one basis.  As of December 31, 2008, the unit holders owned 10,082,248 membership units, or 30.9% of the membership interests in the LLC.  During the nine months ended September 30, 2009, unit holders exchanged 1,932,817 membership units in the LLC (together with the corresponding shares of Class B common stock) for shares of our common stock, substantially all of which are eligible for sale under Rule 144 promulgated under the Securities Act of 1933 upon lapse of a six-month holding period.

The Operating Subsidiaries, entered into engineering, procurement and construction, or EPC contracts with The Industrial Company — Wyoming, or TIC, for the turnkey construction of the Wood River and Fairmont plants.  The Operating Subsidiaries of the LLC entered into agreements with TIC, effective December 11, 2008, that settled certain issues that had arisen between the parties under the terms of the EPC contracts during the course of constructing the plants.  Among the items agreed to were that each plant had met both substantial completion and project completion, that TIC would continue to be responsible for its warranty obligations, and that TIC would pay the subsidiaries of the LLC $2.0 million for each plant, which amounts would be deducted from the retainage amounts owed to TIC.  At September 30, 2009, property, plant and equipment related to the EPC contracts was $248.9 million, which was recorded net of liquidated damages of $19.1 million arising out of completion delays at both plants and net of $4.0 million arising out of the settlement agreements.

Going Concern and Liquidity Considerations

The accompanying consolidated financial statements have been prepared in conformity with accounting principles generally accepted in the United States of America, which contemplate our continuation as a going concern.  Our results of operations and financial condition depend substantially on the price of our main commodity input, corn, relative to the price of our main commodity product, ethanol, which is known in the industry as the “crush spread”.  The prices of these commodities are volatile and beyond our control. As shown in the accompanying consolidated financial statements, the Company incurred a net loss of $8.4 million and $28.5 million during the three and nine months ended September 30, 2009, respectively, primarily resulting from poor operating margins due to unfavorable crush spreads and operating issues in addition to increased legal, financial advisory, and interest expenses associated with the Company’s negotiations with its lenders relating to restructuring and loan conversion.

Certain subsidiaries of the LLC, or the Operating Subsidiaries, received a Notice of Default dated May 22, 2009 from its lenders under the senior secured credit facility, the Senior Debt facility, asserting that a “material adverse effect” had occurred.  The Company disagreed with the lenders assertion that a material adverse effect had occurred and, beginning on May 28, 2009, entered into a series of consent agreements with its lenders granting the Operating Subsidiaries limited access to its bank accounts as it continued discussions with the lenders relating to the asserted events of default and conversion of the construction loans to term loans.  Effective September 29, 2009, the Operating Subsidiaries entered into a Waiver and Amendment to the Senior Debt which converted the two construction loans to two term loans and waived all defaults previously asserted by the lenders.  At conversion, the Waiver and Amendment to the Senior Debt provided for $198.6 million of total funded debt under the term loans.  Following the conversion, the Operating Subsidiaries made their first principal payment on September 30, 2009 of $3.2 million which resulted in $195.4 million in term loans outstanding as of September 30, 2009.  The Waiver and Amendment to the Senior Debt also provides for up to $9.7 million in additional loans to make future principal and interest payments under the Senior Debt facility.

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Although we have come to a resolution with the lenders concerning our Senior Debt facility and losses have narrowed in the third quarter as a result of crush spreads steadily improving throughout the year to date, we cannot predict when or if crush spreads will narrow again or if current or more favorable margins will continue.  In the event crush spreads narrow further, and remain at unprofitable levels for an extended period of time, we may not be able to generate sufficient cash flow to meet our obligations and sustain our operations.  In addition, we have had, and continue to have, severely limited liquidity, with $8.2 million in cash on hand as of September 30, 2009.  If we do not have sufficient cash flow to service our debt, we would need to refinance all or part of our existing debt, sell assets, borrow more money or sell securities, any or all of which we may not be able to do on commercially reasonable terms or at all.  If we are unable to do so, we may be required to curtail operations or cease operating altogether.

Revenues

Our primary source of revenue is the sale of ethanol.  The selling prices we realize for our ethanol are largely determined by the market supply and demand for ethanol, which, in turn, is influenced by industry factors over which we have little control. Ethanol prices are extremely volatile.

We also receive revenue from the sale of distillers grain, which is a residual co-product of the processed corn used in the production of ethanol and is sold as animal feed. The selling prices we realize for our distillers grain are largely determined by the market supply and demand, primarily from livestock operators and marketing companies in the U.S. and internationally.  Distillers grain is sold by the ton and, based upon the amount of moisture retained in the product, can either be sold “wet” or “dry”.

Cost of goods sold and gross income (loss)

Our gross income (loss) is derived from our revenues less our cost of goods sold. Our cost of goods sold is affected primarily by the cost of corn and natural gas. The prices of both corn and natural gas are volatile and can vary as a result of a wide variety of factors, including weather, market demand, regulation and general economic conditions, all of which are outside of our control.

Corn is our most significant raw material cost.  Historically, rising corn prices result in lower profit margins because ethanol producers are unable to pass along increased corn costs to customers. The price and availability of corn is influenced by weather conditions and other factors affecting crop yields, farmer planting decisions and general economic, market and regulatory factors. These factors include government policies and subsidies with respect to agriculture and international trade, and global and local demand and supply for corn and for other agricultural commodities for which it may be substituted, such as soybeans. Historically, the spot price of corn tends to rise during the spring planting season in May and June and tends to decrease during the fall harvest in October and November.

We also purchase natural gas to power steam generation in our ethanol production process and as fuel for our dryers to dry our distillers grain. Natural gas represents our second largest operating cost after corn, and natural gas prices are extremely volatile. Historically, the spot price of natural gas tends to be highest during the heating and cooling seasons and tends to decrease during the spring and fall.

Corn procurement fees paid to Cargill are included in our cost of goods sold. Other cost of goods sold primarily consists of our cost of chemicals and enzymes, electricity, depreciation, manufacturing overhead and rail car lease expenses.

General and administrative expenses

General and administrative expenses consist of salaries and benefits paid to our management and administrative employees, expenses relating to third party services, insurance, travel, office rent, marketing and other expenses, including certain expenses associated with being a public company, such as costs associated with our annual audit and quarterly reviews, compliance with Section 404 of the Sarbanes-Oxley Act, and listing and transfer agent fees.  During the three and nine months ended September 30, 2009, significant third party legal and financial advisory expenses were incurred associated with the Company’s negotiations with its lenders relating to restructuring and loan conversion.

Results of operations

The following discussion summarizes the significant factors affecting the consolidated operating results of the Company for the three and nine months ended September 30, 2009 and 2008. This discussion should be read in conjunction with the unaudited consolidated financial statements and notes to the unaudited consolidated financial statements contained in this Form 10-Q.

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The following table sets forth net sales, expenses and net loss, as well as the percentage relationship to net sales of certain items in our consolidated statements of operations:

	Three Months Ended										Nine Months Ended
	September 30,					September 30,					September 30,					September 30,
	2009					2008					2009					2008
	(unaudited)										(unaudited)
	(dollars in thousands)										(dollars in thousands)
Net sales	$	91,138		100.0	%	$	90,549		100.0	%	$	295,096		100.0	%	$	90,841		100.0	%
Cost of goods sold		89,039		97.7			103,765		114.6			298,911		101.3			104,021		114.5
Gross income (loss)		2,099		2.3			(13,216	)	(14.6	)		(3,815	)	(1.3	)		(13,180	)	(14.5	)
General and administrative expenses		5,737		6.3			2,468		2.7			12,611		4.3			14,968		16.5
Other operating expense		150		0.2			1,345		1.5			150		0.0			1,345		1.5
Operating loss		(3,788	)	(4.2	)		(17,029	)	(18.8	)		(16,576	)	(5.6	)		(29,493	)	(32.5	)
Other income (expense), net		(4,585	)	(5.0	)		(53,612	)	(59.2	)		(11,963	)	(4.1	)		(42,342	)	(46.6	)
Net loss		(8,373	)	(9.2	)		(70,641	)	(78.0	)		(28,539	)	(9.7	)		(71,835	)	(79.1	)

The following table sets forth key operational data for the three and nine months ended September 30, 2009 and the three and nine months ended September 30, 2008 that we believe are important indicators of our results of operations:

	Three Months Ended				Nine Months Ended
	September 30, 2009		September 30, 2008		September 30, 2009		September 30, 2008
	(unaudited)		(unaudited)		(unaudited)		(unaudited)
Ethanol sold (gallons, in thousands)		51,557		35,599		162,568		35,599
Dry distillers grains sold (tons, in thousands)		117.3		68.7		360.8		68.7
Wet distillers grains sold (tons, in thousands)		84.3		83.4		283.1		89.9
Average price of ethanol sold (per gallon)	$	1.56	$	2.20	$	1.54	$	2.20
Average price of dry distillers grains sold (per ton)	$	84.25	$	149.22	$	108.05	$	149.22
Average price of wet distillers grains sold (per ton)	$	23.08	$	38.99	$	34.34	$	39.63
Average corn cost (per bushel)	$	3.14	$	5.36	$	3.58	$	5.45

Three Months Ended September 30, 2009 Compared to the Three Months Ended September 30, 2008

Net Sales:  Net Sales were $91,138,000 for the three months ended September 30, 2009 compared to $90,549,000 for the three months ended September 30, 2008 or an increase of $589,000.   This was due to an increase in volumes of ethanol and distillers grains sold offset by a decline in the price of ethanol and distillers grains.

Cost of goods sold and gross income (loss):  Cost of goods sold was $89,039,000 for the three months ended September 30, 2009 which resulted in gross income of $2,099,000 for the period.  Cost of goods sold for the three months ended September 30, 2009 included $60,456,000 for corn, $5,359,000 for natural gas, $1,817,000 for denaturant, $3,300,000 for electricity, $3,528,000 for chemicals and enzymes, $8,219,000 for general operating expenses, and $6,360,000 for depreciation.  Cost of goods sold was $103,765,000 for the three months ended September 30, 2008 which resulted in a gross loss of $13,216,000 for the three months ended September 30, 2008.  Cost of goods sold for the three months ended September 30, 2008 included $74,442,000 for corn, $11,551,000 for natural gas, $2,103,000 for denaturant, $2,793,000 for electricity, $4,906,000 for chemicals and enzymes, $5,645,000 for general operating expenses, and $2,325,000 for depreciation.  Our cost of goods sold was higher than expected in the three months ended September 30, 2008 due to the delay in having our plants up and running at capacity, which resulted in inefficiencies in all cost categories, except depreciation expense.

General and administrative expenses:  General and administrative expenses increased $3,269,000 or 132.5%, to $5,737,000 for the three months ended September 30, 2009, compared to $2,468,000 for the three months ended September 30, 2008.  The increase was due to an increase of $352,000 in compensation costs and an increase of $2,917,000 in other expenses.  Other expenses for the three months ended September 30, 2009 included $3,205,000 of third party legal and financial advisory expenses, primarily related to the Company’s negotiations with the lenders under the Senior Debt facility concerning restructuring and loan conversion.

Other operating expense:  Other operating expense decreased $1,195,000 or 88.8%, to $150,000 for the three months ended September 30, 2009, compared to $1,345,000 for the three months ended September 30, 2008.  The expense for the three months ended September 30, 2009 consisted of a $150,000 insurance claim deductible expense.  The expense for the three months ended September 30, 2008 consisted of a $250,000 insurance claim deductible expense and a $1,095,000 write off of development costs associated with the evaluation of three additional plant sites.

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Other income (expense):  Interest income decreased $122,000, or 90.4%, to $13,000 for the three months ended September 30, 2009, compared to $135,000 for the three months ended September 30, 2008.  The decrease was primarily attributable to a decrease in the amount of funds invested in money market mutual funds during the period.

Interest expense was $4,598,000 for the three months ended September 30, 2009, compared to $1,632,000 for the three months ended September 30, 2008, or an increase of $2,966,000.  The increase is a result of the Company no longer capitalizing interest associated with the loans financing construction of the plants effective September 1, 2008.  The amount represents one month of interest expense on such loans during the three months ended September 30, 2008, compared to three months of expense in the three months ended September 30, 2009.  Interest expense was approximately $1,050,000 higher than expected for the three months ended September 30, 2009, as a result of the Notice of Default issued by the lenders under the Senior Debt facility, following which the lenders caused the construction loans and working capital loans to revert to base rate loans effective June 1, 2009, carrying a higher interest rate.  Effective October 1, 2009, the term loans and working capital loans under the Senior Debt facility were converted back to LIBOR-based loans carrying a lower interest rate.

Other non-operating expense was zero for the three months ended September 30, 2009, compared to $2,123,000 for the three months ended September 30, 2008.  The loss in the three months ended September 30, 2008 consisted of a $2,165,000 loss on the sale of corn, which was offset by $42,000 of other miscellaneous income.

Loss on derivative financial instruments was zero for the three months ended September 30, 2009, compared to $49,992,000 for the three months ended September 30, 2008.  The loss in 2008 was a result of the Company realizing losses associated with commodities hedging contracts during the period.  The Company was not a party to any such derivative financial instruments during the three months ended September 30, 2009.

Noncontrolling Interest.  The net loss attributable to the noncontrolling interest decreased $35,354,000 to $2,139,000 for the three months ended September 30, 2009, compared to $37,493,000 for the three months ended September 30, 2008.  The decrease was attributable to the Company’s net loss decreasing from $70,641,000 for the three months ended September 30, 2008 to $8,373,000 for the three months ended September 30, 2009, as well as the decrease in the percentage ownership of the noncontrolling interest from 53.1% at September 30, 2008 to 25.0% at September 30, 2009.

Nine Months Ended September 30, 2009 Compared to the Nine Months Ended September 30, 2008

Both of the Company’s plants commenced start-up and began commercial operations in late June 2008.  Because of this, we reported only three months of net sales, cost of goods sold, or gross profit (loss) for the nine months ended September 30, 2008 for comparison purposes.

Net Sales:  Net Sales were $295,096,000 for the nine months ended September 30, 2009 compared to $90,841,000 for the nine months ended September 30, 2008 or an increase of $204,255,000.   This was due to only three months of operations in the nine months ended September 30, 2008, compared to nine full months of operations in the period ended September 30, 2009.

Cost of goods sold and gross loss:  Cost of goods sold was $298,911,000 for the nine months ended September 30, 2009 which resulted in a gross loss of $3,815,000.  Cost of goods sold included $211,736,000 for corn, $18,493,000 for natural gas, $4,934,000 for denaturant, $9,293,000 for electricity, $12,677,000 for chemicals and enzymes, $22,868,000 for general operating expenses, and $18,910,000 for depreciation.  Our cost of goods sold was high in relation to revenues primarily due to the cost of corn per gallon of ethanol being greater than it historically has been, resulting in a narrowed crush spread.  Cost of goods sold was $104,021,000 for the nine months ended September 30, 2008 which resulted in a gross loss of $13,180,000 for the nine months ended September 30, 2008.  Cost of goods sold included $74,701,000 for corn, $11,687,000 for natural gas, $2,152,000 for denaturant, $2,802,000 for electricity, $5,416,000 for chemicals and enzymes, $4,938,000 for general operating expenses, and $2,325,000 for depreciation.  Our cost of goods sold during the period ended September 30, 2008 was higher than expected due to the delay in having our plants up and running at capacity, which resulted in inefficiencies in all cost categories, except depreciation expense.

General and administrative expenses:  General and administrative expenses decreased $2,357,000 or 15.7%, to $12,611,000 for the nine months ended September 30, 2009, compared to $14,968,000 for the nine months ended September 30, 2008.  The decrease was primarily due to a decrease in compensation expense of $2,009,000 and other expense of $348,000.  Of the $2,009,000 decrease in compensation expense, $1,328,000 was attributable to plant employees who began working and training at the plants in early 2008.  As the plants did not begin commercial operation until June 2008, the plant employees’ compensation costs were included in selling, general and administrative expenses until that time while the plant employees’ costs are included in cost of goods sold for the nine months ended September 30, 2009.  Of the $348,000 decrease in other expense, $4,854,000 was attributable to an increase in third party legal and financial advisory expenses, primarily related to the Company’s negotiations with the lenders under the Senior Debt facility concerning restructuring and loan conversion expenses relating to the plants, which was offset by a decrease in other general and administrative expenses of $5,202,000.  Of the $5,202,000 decrease in other expenses, $4,223,000 was attributable to expenses related to the plants.  As the plants did not begin commercial operation until June 2008, all start-up costs were included in general and administrative expenses until that time.  Subsequent to June 2008, plant costs are now included in cost of goods sold.

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Other operating expense:  Other operating expense decreased $1,195,000 or 88.8%, to $150,000 for the nine months ended September 30, 2009, compared to $1,345,000 for the nine months ended September 30, 2008.  The expense for the nine months ended September 30, 2009 consisted of a $150,000 insurance claim deductible expense.  The expense for the nine months ended September 30, 2008 consisted of a $250,000 insurance claim deductible expense and a $1,095,000 write off of development costs associated with the evaluation of three additional plant sites.

Other income (expense):  Interest income decreased $913,000 or 92.5%, to $74,000 for the nine months ended September 30, 2009, compared to $987,000 for the nine months ended September 30, 2008.  The decrease was primarily attributable to a decrease in the amount of funds available to be invested in money market mutual funds as a result of the Company having to fund operating losses with its existing cash balances.

Interest expense was $12,036,000 for the nine months ended September 30, 2009, compared to $1,632,000 for the nine months ended September 30, 2008, as a result of the Company no longer capitalizing interest associated with the loans financing the construction of the plants effective September 1, 2008.  The amount represents one month of interest expense on such loans during the nine months ended September 30, 2008, compared to nine months of expense in the nine months ended September 30, 2009.  Interest expense was approximately $1,400,000 higher than expected for the nine months ended September 30, 2009, as a result of the Notice of Default issued by the lenders under the Senior Debt facility, following which the lenders caused the construction loans and working capital loans to revert to base rate loans effective June 1, 2009, carrying a higher interest rate.  Effective October 1, 2009, the term loans and working capital loans under the Senior Debt facility were converted back to LIBOR-based loans carrying a lower interest rate.

Other non-operating expense was $1,000 for the nine months ended September 30, 2009 compared to $1,785,000 for the nine months ended September 30, 2008.  The loss in 2008 consisted of a $1,879,000 loss on the sale of corn which was offset by $94,000 of other miscellaneous income.

 Loss on derivative financial instruments was zero for the nine months ended September 30, 2009, compared to $39,912,000 for the nine months ended September 30, 2008.  The loss in 2008 was a result of the Company incurring losses associated with commodities hedging contracts during the period.  The Company was not a party to any such hedging contracts during the nine months ended September 30, 2009.

Noncontrolling Interest.  The net loss attributable to the noncontrolling interest decreased $29,795,000 to $8,061,000 for the nine months ended September 30, 2009, compared to $37,856,000 for the nine months ended September 30, 2008.  The decrease was attributable to the Company’s net loss decreasing from $71,835,000 for the nine months ended September 30, 2008 to $28,539,000 for the nine months ended September 30, 2009, as well as the decrease in the percentage ownership of the noncontrolling interest from 53.1% at September 30, 2008 to 25.0% at September 30, 2009.

Liquidity and capital resources

Our cash flows from operating, investing and financing activities during the nine month periods ended September 30, 2009 and September 30, 2008 are summarized below (in thousands):

	For the			For the
	Nine Months Ended			Nine Months Ended
	September 30, 2009			September 30, 2008
Cash provided by (used in):
Operating activities	$	(10,694	)	$	(74,542	)
Investing activities		(10,111	)		(43,819	)
Financing activities		16,673			82,015
Net decrease in cash and equivalents	$	(4,132	)	$	(36,346	)

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Cash used in operating activities. Net cash used in operating activities was $10,694,000 for the nine months ended September 30, 2009, compared to $74,542,000 for the nine months ended September 30, 2008.  For the nine months ended September 30, 2009, the amount was primarily comprised of a net loss of $28,539,000 and working capital uses of $3,427,000 which were offset by non-cash charges, primarily depreciation and amortization, of $21,272,000. Working capital uses primarily related to decreases in accounts payable and other current liabilities offset by decreases in accounts receivable and inventory.  For the nine months ended September 30, 2008, the amount was primarily comprised of a net loss of $71,835,000, and working capital uses of $6,885,000, which were offset by non-cash charges, primarily depreciation and amortization and loss on disposal of assets, of $4,178,000. Working capital uses mostly related to an increase in accounts receivable of $18,727,000 and an increase in inventory of $17,066,000 offset by an increase in accounts payable of $26,448,000.

Cash used in investing activities.  Net cash used in investing activities was $10,111,000 for the nine months ended September 30, 2009, compared to $43,819,000 for the nine months ended September 30, 2008.  The cash used during the nine months ended September 30, 2009 was primarily for payment of the construction retainage on the Wood River and Fairmont ethanol plants, while during the nine months ended September 30, 2008 the cash used was primarily for capital expenditures related to the construction of the Wood River and Fairmont ethanol plants.  The decrease between the nine months ended September 30, 2008 and 2009 was a result of the construction being largely completed by the end of 2008, with only minor construction projects being completed in 2009.

Cash provided by financing activities.  Net cash provided by financing activities was $16,673,000 for the nine months ended September 30, 2009, compared to $82,015,000 for the nine months ended September 30, 2008.  For the nine months ended September 30, 2009 the amount was primarily comprised of $3,000,000 of borrowings under the Company’s working capital facility and $17,387,000 of proceeds under its term (formerly construction) loan facilities, which were offset by $1,233,000 in payments of Subordinated Debt and $3,150,000 in payments of the Senior Debt.  For the nine months ended September 30, 2008 the amount was primarily comprised of $10,000,000 of borrowings under the Company’s working capital facility and $75,500,000 in borrowings under the Company’s construction facilities offset by $2,276,000 in payments for treasury stock purchases.

Our principal sources of liquidity at September 30, 2009 consisted of cash and equivalents, working capital generated from operations, and available borrowings under our bank facilities as summarized in the following table (in thousands).

	September 30, 2009
Cash and equivalents	$	8,167
Working capital	(2,214)		(1)
Debt Service Reserve loan commitment availability	9,743

(1)    Includes $20.0 million working capital loan maturing in September 2010

Our principal liquidity needs are expected to be funding our operations, funding project costs, debt service requirements of our indebtedness, and general corporate purposes.  Our Debt Service Reserve availability can only be utilized to fund principal and interest payments under our Senior Debt facility.

Stock repurchase plan

On October 15, 2007, the Company announced the adoption of a stock repurchase plan pursuant to which the repurchase of up to $7.5 million of the Company’s common stock was authorized. Purchases were funded out of cash on hand and made from time to time in the open market.  From the inception of the buyback program through September 30, 2009, the Company had repurchased 809,606 shares at an average price of $5.30 per share, leaving $3,184,000 available under the repurchase plan.  The shares repurchased are held as treasury stock.  As of September 30, 2009, there were no plans to repurchase any additional shares.

Tax and our tax benefit sharing agreement

As a result of future exchanges of membership interests in the LLC for shares of our common stock, the tax basis of the LLC’s assets attributable to our interest in the LLC may be increased. These increases in tax basis, if any, will result in a potential tax benefit to the Company that would not have been available but for the exchanges of the LLC membership interests for shares of our common stock. These increases in tax basis would reduce the amount of tax that we would otherwise be required to pay in the future, although the IRS may challenge all or part of the tax basis increases, and a court could sustain such a challenge. There have been no assets recognized with respect to any exchanges made through September 30, 2009. The amount of any potential increases in tax basis and the resulting recording of tax assets are dependent upon the share price of our common stock at the time of the exchange of the membership interests in the LLC for shares of our common stock.  At the current trading price, which was $1.45 as of November 9, 2009, we do not anticipate any material change in the tax basis of the LLC’s assets.

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We have entered into a tax benefit sharing agreement with our historical LLC equity investors that will provide for a sharing of these tax benefits, if any, between the Company and the historical LLC equity investors. Under this agreement, the Company will make a payment to an exchanging LLC member of 85% of the amount of cash savings, if any, in U.S. federal, state and local income tax that we actually realize as a result of this increase in tax basis. The Company and its common stockholders will benefit from the remaining 15% of cash savings, if any, in income tax that is realized by the Company. For purposes of the tax benefit sharing agreement, cash savings in income tax will be computed by comparing our actual income tax liability to the amount of such taxes that we would have been required to pay had there been no increase in the tax basis of the tangible and intangible assets of the LLC as a result of the exchanges and had we not entered into the tax benefit sharing agreement. The term of the tax benefit sharing agreement will continue until all such tax benefits have been utilized or expired, unless a change of control occurs and we exercise our resulting right to terminate the tax benefit sharing agreement for an amount based on agreed payments remaining to be made under the agreement.

Although we are not aware of any issue that would cause the IRS to challenge a tax basis increase, our historical LLC equity investors are not required to reimburse us for any payments previously made under the tax benefit sharing agreement. As a result, in certain circumstances we could make payments to our historical LLC equity investors under the tax benefit sharing agreement in excess of our cash tax savings. Our historical LLC equity investors will receive 85% of our cash tax savings, leaving us with 15% of the benefits of the tax savings. The actual amount and timing of any payments under the tax benefit sharing agreement will vary depending upon a number of factors, including the timing of exchanges, the extent to which such exchanges are taxable, the price of our common stock at the time of the exchange and the amount and timing of our income. As a result of the size of the potential increases of the tangible and intangible assets of the LLC attributable to our interest in the LLC, during the expected term of the tax benefit sharing agreement, the payments that we may make to our historical LLC equity investors could be substantial should our stock price appreciate prior to their exchanging their membership interests in the LLC.

Senior Debt facility

In September 2006, our Operating Subsidiaries entered into a $230.0 million senior secured bank facility with BNP Paribas and a syndicate of lenders to finance the construction of our Wood River and Fairmont plants. Neither the Company nor the LLC is a borrower under the Senior Debt facility, although the equity interests and assets of our subsidiaries are pledged as collateral to secure the debt under the facility.

The Senior Debt facility initially consisted of two construction loans, which together totaled $210.0 million of available borrowings, and working capital loans of up to $20.0 million.  No principal payments were required until the construction loans were converted to term loans.  Thereafter, principal payments are payable quarterly at a minimum amount of $3,150,000, with additional pre-payments to be made out of available cash flow.  The Operating Subsidiaries received a Notice of Default from the lenders, dated May 22, 2009, asserting that a “material adverse effect” had occurred due to the Company’s lack of liquidity.  The Company disagreed with the lenders assertion that a material adverse effect had occurred and, beginning on May 28, 2009, entered into a series of consent agreements with its lenders, granting the Operating Subsidiaries limited access to its bank accounts as it continued discussions with the lenders relating to the asserted events of default and conversion of the construction loans to term loans.  Effective September 29, 2009, the Operating Subsidiaries entered into a Waiver and Amendment to the Senior Debt which converted the two construction loans to two term loans and waived all defaults previously asserted by the lenders.  At conversion, the Waiver and Amendment to the Senior Debt provided for $198.6 million of total funded debt under the term loans.  Following the conversion, the Operating Subsidiaries made their first principal payment on September 30, 2009 of $3.2 million which resulted in $195.4 million in term loans outstanding as of September 30, 2009.  The Waiver and Amendment to the Senior Debt also provides for up to $9.7 million in additional loans to make future principal and interest payments under the Senior Debt facility.  The term loans mature in September 2014.

The Senior Debt facility also includes working capital loans of up to $20.0 million, a portion of which is available to us in the form of letters of credit. The working capital loans are available to pay certain operating expenses of the plants, and may be drawn on and repaid at any time until maturity.  The working capital loans mature in September 2010, and as a result the entire outstanding amount of such loans was classified as current as of September 30, 2009.  However ,with consent from two-thirds of the lenders, the maturity date of the working capital loans may be extended to September 2011.  As of September 30, 2009, the Company’s subsidiaries had $20.0 million of outstanding working capital loans.

Although we have borrowed substantial amounts under the Senior Debt facility, additional borrowings remain subject to the satisfaction of a number of additional conditions precedent, including continued compliance with debt covenants and payment of principal and interest when due. To the extent that we are not able to satisfy these requirements, we will not be able to make additional borrowings under the Senior Debt facility without obtaining a waiver or consent from the lenders.

The Senior Debt facility includes certain limitations on, among other things, the ability of our subsidiaries to incur additional indebtedness, grant liens or encumbrances, declare or pay dividends or distributions, conduct asset sales or other dispositions, mergers or consolidations, and conduct transactions with affiliates. The Company has established collateral deposit accounts maintained by an agent of the banks, into which our revenues are to be deposited. These funds will then be allocated into various sweep accounts held by the collateral agent, with the remaining cash, if any, distributed to the Company each month. The sweep accounts have various provisions, including an interest coverage ratio and debt service reserve requirements, which will restrict the amount of cash that is made available to the Company each month.

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The obligations under the Senior Debt facility are secured by first priority liens on all assets of the borrowers and a pledge of all of our equity interests in our subsidiaries. In addition, substantially all cash of the borrowers is required to be deposited into blocked collateral accounts subject to security interests to secure any outstanding obligations under the Senior Debt facility. Funds will be released from such accounts only in accordance with the terms of the Senior Debt facility.

Interest rates on each of the loans under the Senior Debt facility will be, at our option, (a) a base rate equal to the higher of (i) the federal funds effective rate plus 0.5% or (ii) BNP Paribas’s prime rate, in each case, plus 2.0% or (b) a Eurodollar rate equal to LIBOR adjusted for reserve requirements plus 3.0%. Interest periods for loans based on a Eurodollar rate will be, at our option, one, three or six months, or, if available, nine or twelve months. Accrued interest is due quarterly in arrears for base rate loans, on the last date of each interest period for Eurodollar loans with interest periods of one or three months, and at three month intervals for Eurodollar loans with interest periods in excess of three months. Overdue amounts bear additional interest at a default rate of 2.0%. The average interest rate in effect on the borrowings at September 30, 2009 was 3.3%. As a result of the Notice of Default, the lenders caused the construction loans and working capital loans to revert to base rate, effective June 1, 2009 which resulted in additional interest expense of approximately $350,000 per month for the period of June through September 2009. This resulted in incremental interest expense of approximately $1,050,000 for the third quarter of 2009. Effective October 1, 2009, the term loans and working capital loans under the Senior Debt facility were converted back to LIBOR-based loans.

We are required to pay certain fees in connection with our Senior Debt facility, including a commitment fee equal to 0.50% per annum on the daily average unused portion of the construction loans and working capital loans and letter of credit fees. During the three and nine months ended September 30, 2009 we incurred $0, and $51,000 in commitment fees, respectively.

Debt issuance fees and expenses of approximately $8.5 million ($5.2 million, net of accumulated amortization) have been incurred in connection with the Senior Debt facility through September 30, 2009. These costs have been deferred and are being amortized over the term of the Senior Debt facility, although the amortization of debt issuance costs during the period of construction through August 2008, were capitalized as part of the cost of the constructed assets. During the three month and nine month periods ended September 30, 2009, we amortized $361,000 and $723,000 in debt issuance costs to interest expense, respectively.

Subordinated Debt agreement

The LLC is the borrower of subordinated debt under a loan agreement dated September 25, 2006, entered into with certain affiliates of Greenlight Capital, Inc. and Third Point LLC, each of which are related parties. The loan agreement provides for up to $50.0 million of non-amortizing loans, all of which must be used for general corporate purposes, working capital or the development, financing and construction of our ethanol plants. Interest on the subordinated debt is payable quarterly in arrears at a 15.0% annual rate. The entire principal balance, if any, plus all accrued and unpaid interest will be due in March 2015. Once repaid, the subordinated debt may not be re-borrowed. The subordinated debt is secured by the subsidiary equity interests owned by the LLC and are fully and unconditionally guaranteed by all of the LLC’s subsidiaries, which guarantees are subordinated to the obligations of these subsidiaries under our Senior Debt facility. A default under our Senior Debt facility would also constitute a default under our subordinated debt and would entitle the lenders to accelerate the repayment of amounts outstanding. The receipt by the Company of the Notice of Default dated May 22, 2009, from the lenders under the Senior Debt facility constituted an event of default under the Subordinated Debt. The Sub Lenders did not elect to exercise any of the rights and remedies available to them as a result of the Notice of Default under the Senior Debt facility, and did not declare or otherwise provide a notice of acceleration. Since all of the asserted events of default under the Senior Debt facility were waived by the lenders under that facility on September 29, 2009, there is no longer an event of default under the Subordinated Debt.

All $50.0 million available under the subordinated debt agreement was borrowed in the first six months of 2007. During the third quarter of 2007, the Company retired $30.0 million of its subordinated debt with a portion of the initial public offering proceeds. This resulted in accelerated amortization of deferred fees of approximately $3.1 million, which represents the fees relating to the pro rata share of the retired debt.

The LLC did not make the scheduled quarterly interest payments which were due on September 30, 2008 and December 31, 2008. Under the terms of the subordinated debt agreement, the failure to pay interest when due is an event of default. In January 2009, the LLC and the subordinated debt lenders entered into a waiver and amendment agreement to the subordinated debt agreement. Under the waiver and amendment, an initial payment of $2.0 million, which was made on January 16, 2009, was made to pay the $767,000 of accrued interest due September 30, 2008 and to reduce outstanding principal by $1,233,000. As of September 30, 2009, the LLC had $20.1 million outstanding under its subordinated debt facility. Effective upon the $2.0 million initial payment, the subordinated debt lenders waived the defaults and any associated penalty interest relating to our failure to make the September 30, 2008 and the December 31, 2008 quarterly interest payments. Effective December 1, 2008, interest on the subordinated debt began accruing at a 5.0% annual rate compounded quarterly, a rate that will apply until the debt owed to Cargill, under an agreement entered into simultaneously, has been paid in full, at which time the rate will revert to a 15.0% annual rate and quarterly payments in arrears are required. As long as the debt to Cargill remains outstanding, future payments to the subordinated debt lenders will be contingent upon available cash (as defined in both agreements) being received by the LLC.

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Debt issuance fees and expenses of approximately $5.5 million ($1.5 million, net of accumulated amortization) have been incurred in connection with the subordinated debt through September 30, 2009. Debt issuance costs associated with the subordinated debt are being deferred and amortized over the term of the agreement, although the amortization of debt issuance costs during the period of construction through August 2008 were capitalized as part of the cost of the constructed assets.

Cargill debt agreement

During the second quarter of 2008, the LLC entered into various derivative instruments with Cargill in order to manage exposure to commodity prices for corn and ethanol, generally through the use of futures, swaps, and option contracts. During August 2008, the market price of corn declined sharply, exposing the LLC to large losses and significant unmet margin calls under these contracts. Cargill began liquidating the hedge contracts in August 2008 and by September 30, 2008 the LLC was no longer a party to any hedge contracts for any of its commodities. In January 2009, the LLC and Cargill entered into an agreement which finalized the payment terms for $17.4 million owed to Cargill by the LLC related to these hedging losses. The agreement with Cargill required an initial payment of $3.0 million on the outstanding balance, which was paid on December 5, 2008. Upon the initial payment of $3.0 million, Cargill also forgave $3.0 million. Effective December 1, 2008, interest on the Cargill debt began accruing at a 5.0% annual rate compounded quarterly. Future payments to Cargill of both principal and interest are contingent upon the receipt by the LLC of available cash, as defined in the agreement. Cargill will forgive, on a dollar for dollar basis, a further $2.8 million as it receives the next $2.8 million of principal payments. The Cargill Debt is being accounted for in accordance with Financial Accounting Standards Board Accounting Standards Codification (“FASB ASC”) 470-60, Troubled Debt Restructurings by Debtors. As the future cash payments specified by the terms exceed the carrying amount of the debt before the $3.0 million is forgiven, the carrying amount of the debt is not reduced and no gain is recorded. As future payments are made, the LLC will determine, based on the timing of payments, whether or not any gain contingency should be recorded.

Capital lease

The LLC, through its subsidiary that constructed the Fairmont plant, entered into an agreement with the local utility pursuant to which the utility has built and owns and operates a substation and distribution facility in order to supply electricity to the plant. The LLC is paying a fixed facilities charge based on the cost of the substation and distribution facility of $34,000 per month, over the 30-year term of the agreement. This fixed facilities charge is being accounted for as a capital lease in the accompanying financial statements. The agreement also includes a $25,000 monthly minimum energy charge that also began in the first quarter of 2008.

Notes payable

Notes payable relate to certain financing agreements in place at each of our sites. The subsidiaries of the LLC that constructed the plants entered into finance agreements in the first quarter of 2008 for the purchase of certain rolling stock equipment to be used at the facilities for $748,000. The notes have fixed interest rates (weighted average rate of approximately 5.6%) and require 48 monthly payments of principal and interest, maturing in the first and second quarter of 2012. In addition, the subsidiary of the LLC that constructed the Wood River facility has entered into a note payable for $2,220,000 with a fixed interest rate of 11.8% for the purchase of our natural gas pipeline. The note requires 36 monthly payments of principal and interest and matures in the first quarter of 2011. In addition, the subsidiary of the LLC that constructed the Wood River facility has entered in a note payable for $419,000 with the City of Wood River for special assessments related to street, water, and sanitary improvements at our Wood River facility. This note requires 10 annual payments of $58,000, including interest at 6.5%, and matures in 2018.

Tax increment financing

In February 2007, the subsidiary of the LLC that constructed the Wood River plant received $6.0 million from the proceeds of a tax increment revenue note issued by the City of Wood River, Nebraska. The proceeds funded improvements to property owned by the subsidiary. The City of Wood River will pay the principal and interest of the note from the incremental increase in the property taxes related to the improvements made to the property. The proceeds have been recorded as a liability and will be reduced as the LLC remits property taxes to the City of Wood River beginning in 2008 and continuing for approximately 13 years. The LLC has guaranteed the principal and interest of the tax increment revenue note if, for any reason, the City of Wood River fails to make the required payments to the holder of the note.

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Letters of credit

The Company had obtained three letters of credit, for a total of approximately $1.9 million outstanding, as of September 30, 2009. These letters of credit have been provided as collateral to the natural gas provider at the Fairmont plant and the electrical service providers at both the Fairmont and Wood River plants, and are all secured by certificates of deposit in the respective amounts, which will automatically renew each year.

Off-balance sheet arrangements

Except for our operating leases discussed in Note 12 to the consolidated financial statements, we do not have any off-balance sheet arrangements that have or are reasonably likely to have a material current or future effect on our financial condition, changes in financial condition, revenues or expenses, results of operations, liquidity, capital expenditures or capital resources.

Summary of critical accounting policies and significant estimates

The consolidated financial statements of BioFuel Energy Corp. included in this Form 10-Q have been prepared in conformity with accounting principles generally accepted in the United States. Note 2 to these financial statements contains a summary of our significant accounting policies, certain of which require the use of estimates and assumptions. Accounting estimates are an integral part of the preparation of financial statements and are based on judgments by management using its knowledge and experience about the past and current events and assumptions regarding future events, all of which we consider to be reasonable. These judgments and estimates reflect the effects of matters that are inherently uncertain and that affect the carrying value of our assets and liabilities, the disclosure of contingent liabilities and reported amounts of expenses during the reporting period.

The accounting estimates and assumptions discussed in this section are those that we believe involve significant judgments and the most uncertainty. Changes in these estimates or assumptions could materially affect our financial position and results of operations and are therefore important to an understanding of our consolidated financial statements.

Recoverability of property, plant and equipment

We have made a significant investment in property, plant and equipment. Construction of our two ethanol facilities located in Wood River and Fairmont has been completed. We evaluate the recoverability of fixed assets whenever events or changes in circumstances indicate that the carrying value of our property, plant and equipment may not be recoverable.

Management must continuously assess whether or not circumstances require a formal evaluation of the recoverability of our property, plant and equipment. In analyzing impairment, management must estimate future ethanol and distillers grain sales volume, ethanol and distillers grain prices, corn and natural gas prices, inflation and capital spending, among other factors. These estimates involve significant inherent uncertainties, and the measurement of the recoverability of the cost of our property, plant and equipment is dependent on the accuracy of the assumptions used in making the estimates and how these estimates compare to our future operating performance. Certain of the operating assumptions will be particularly sensitive and subject to change as the ethanol industry develops.

Recoverability is measured by comparing the carrying value of an asset with estimated undiscounted future cash flows expected to result from the use of the asset and its eventual disposition. An impairment loss is reflected as the amount by which the carrying amount of the asset exceeds the fair value of the asset. Fair value is determined based on the present value of estimated expected future cash flows using a discount rate commensurate with the risk involved, quoted market prices or appraised values, depending on the nature of the assets. As of September 30, 2009, no circumstances existed which would indicate the carrying value of long-lived assets may not be fully recoverable. Therefore, no recoverability test was performed.

Share-based compensation

Under the fair value recognition provisions of this guidance, share-based compensation cost for stock options granted is measured at the grant date based on the award’s fair value as calculated by the Black-Scholes option-pricing model and is recognized as expense over the requisite service period. The key assumptions generally used in the Black-Scholes calculations include the expected term, the estimated volatility of our common stock, and the risk-free rate of return during the expected term. Additionally, we are required to estimate the expected forfeiture rate, as we recognize expense only for those shares or stock options expected to vest. Due to the uncertainties inherent in these estimates, the amount of compensation expense to be recorded will be dependent on the assumptions used in making the estimates.

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Recent accounting pronouncements

In May 2009, the Financial Accounting Standards Board issued new requirements related to subsequent events, to incorporate the accounting and disclosure requirements for subsequent events into GAAP. This new requirement introduces new terminology, defines a date through which management must evaluate subsequent events, and lists the circumstances under which an entity must recognize and disclose events or transactions occurring after the balance-sheet date. The Company adopted these new requirements as of June 30, 2009, which was the required effective date.

The Company evaluated its September 30, 2009 financial statements for subsequent events through November 12, 2009, the date the financial statements were issued. The Company is not aware of any subsequent events which would require recognition or disclosure in the financial statements.

From time to time, new accounting pronouncements are issued by the FASB or other standards setting bodies that are adopted by us as of the specified effective date. Unless otherwise discussed, our management believes that the impact of recently issued standards that are not yet effective will not have a material impact on our consolidated financial statements upon adoption.

ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK

We are subject to significant risks relating to the prices of four primary commodities: corn and natural gas, our principal production inputs, and ethanol and distillers grain, our principal products. These commodities are also subject to geographic basis differentials, which can vary considerably. In recent years, ethanol prices have been primarily influenced by gasoline prices, the availability of other gasoline additives and federal, state and local laws, regulations, subsidies and tariffs. Distillers grain prices tend to be influenced by the prices of alternative animal feeds. However, in the short to intermediate term, logistical issues may have a significant impact on ethanol prices. In addition, the acceptance by livestock operators of the anticipated sharp increase in quantities of distillers grain production as new ethanol plants become operational could significantly depress its price.

We expect that lower ethanol prices will tend to result in lower profit margins even when corn prices decrease due to the significance of fixed costs. The price of ethanol is subject to wide fluctuations due to domestic and international supply and demand, infrastructure, government policies, including subsidies and tariffs, and numerous other factors. Ethanol prices are extremely volatile. From October 1, 2007 to September 30, 2009, the CBOT ethanol month prices have fluctuated from a low of $1.40 per gallon in December 2008 to a high of $2.94 per gallon in June 2008 and averaged $1.96 per gallon during this period.

We expect that lower distillers grain prices will tend to result in lower profit margins. The selling prices we realize for our distillers grain are largely determined by market supply and demand, primarily from livestock operators and marketing companies in the U.S. and internationally. Distillers grain are sold by the ton and can either be sold “wet” or “dry”.

We anticipate that higher corn prices will tend to result in lower profit margins, as it is unlikely that such an increase in costs can be passed on to ethanol customers. The availability as well as the price of corn is subject to wide fluctuations due to weather, carry-over supplies from the previous year or years, current crop yields, government agriculture policies, international supply and demand and numerous other factors. Using an average corn price of $4.00 per bushel, we estimate that corn will represent approximately 70% of our operating costs. Historically, the spot price of corn tends to rise during the spring planting season in May and June and tends to decrease during the fall harvest in October and November. From October 1, 2007 to September 30, 2009 the CBOT month price of corn has fluctuated from a low of $3.00 per bushel in September 2009 to a high of $7.55 per bushel in June 2008 and averaged $4.53 per bushel during this period.

Higher natural gas prices will tend to reduce our profit margin, as it is unlikely that such an increase in costs can be passed on to ethanol customers. Natural gas prices and availability are affected by weather, overall economic conditions, oil prices and numerous other factors. Using an average corn price of $4.00 per bushel and an average price of $5.50 per Mmbtu for natural gas, we estimate that natural gas will represent approximately 8.5% of our operating costs. Historically, the spot price of natural gas tends to be highest during the heating and cooling seasons and tends to decrease during the spring and fall. From October 1, 2007 to September 30, 2009, the Nymex month price of natural gas has fluctuated from a low of $2.51 per Mmbtu in September 2009 to a high of $13.58 per Mmbtu in July 2008 and averaged $6.90 per Mmbtu during this period.

To reduce the risks implicit in price fluctuations of these four principal commodities and variations in interest rates, we plan to continuously monitor these markets and to hedge a portion of our exposure, provided we have the financial resources to do so. Specifically, when we can reduce volatility through hedging on an attractive basis, we expect to do so. Our objective would be to hedge between 60% and 75% of our commodity price exposure on a rolling 12 to 24 month basis when a positive margin can be assured. This range would include the effect of intermediate to longer-term purchase and sales contracts we may enter into, which act as de facto hedges. In hedging, we may buy or sell exchange-traded commodities futures or options, or enter into swaps or other hedging arrangements. While there is an active futures market for corn and natural gas, the futures market for ethanol is still in its infancy and very illiquid, and we do not believe a futures market for distillers grain currently exists. Although we will attempt to link our hedging activities such that sales of ethanol and distillers grain match pricing of corn and natural gas, there is a limited ability to do this against the current forward or futures market for ethanol and corn. Consequently, our hedging of ethanol and distillers grain may be limited or have limited effectiveness due to the nature of these markets. Due to the Company’s limited liquidity resources and the potential for required postings of significant cash collateral or margin deposits resulting from changes in commodity prices associated with hedging activities, the Company is limited in its ability to hedge with third-party brokers. We also may vary the amount of hedging activities we undertake, and may choose to not engage in hedging transactions at all. As a result, our operations and financial position may be adversely affected by increases in the price of corn or natural gas or decreases in the price of ethanol or unleaded gasoline.

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We have prepared a sensitivity analysis as set forth below to estimate our exposure to market risk with respect to our projected corn and natural gas requirements and our ethanol sales for the last three months of 2009. Market risk related to these factors is estimated as the potential change in pre-tax income, resulting from a hypothetical 10% adverse change in the fair value of our corn and natural gas requirements and our ethanol sales based on current prices as of September 30, 2009, excluding activity we may undertake related to corn and natural gas forward and futures contracts used to hedge our market risk. Actual results may vary from these amounts due to various factors including significant increases or decreases in the LLC’s production capacity during the last three months of 2009.

	Volume Requirements		Units	Price per Unit at September 30, 2009		Hypothetical Adverse Change in Price			Change in Three months ended 12/31/09 Pre-tax Income
	(in millions)								(in millions)
Ethanol		55.8	Gallons	$	1.67		10	%	$	(9.3	)
Corn		20.1	Bushels	$	3.39		10	%	$	(6.8	)
Natural Gas		1.7	Mmbtu	$	3.72		10	%	$	(0.6	)

We believe that managing our commodity price exposure has the potential to reduce the volatility implicit in a commodity-based business. However, it may also tend to reduce our ability to benefit from favorable commodity price changes. Hedging arrangements also expose us to risk of financial loss if the counterparty defaults or in the event of extraordinary volatility in the commodities markets. Furthermore, if geographic basis differentials are not hedged, they could cause our hedging programs to be ineffective or less effective than anticipated. In the third quarter of 2008, corn prices pulled back sharply resulting in the Company realizing significant losses on its hedge contracts. See “Management’s Discussion and Analysis of Financial Condition and Results of Operations—Liquidity and capital resources—Cargill debt agreement” elsewhere in this report.

We are subject to interest rate risk in connection with our Senior Debt facility. Under the facility, our bank borrowings bear interest at a floating rate based, at our option, on LIBOR or an alternate base rate. In September 2007, the LLC, through its subsidiaries, entered into an interest rate swap for a two-year period. The contract was for $60.0 million principal with a fixed interest rate of 4.65% payable by the subsidiary, and the variable interest rate, the one-month LIBOR, payable by the third party. The difference between the subsidiary’s fixed rate of 4.65% and the one-month LIBOR rate, which is reset every 30 days, is received or paid every 30 days in arrears. This interest rate swap expired in September 2009. In March 2008, the LLC, through its subsidiaries, entered into a second interest rate swap for a two-year period. The contract is for $50.0 million principal with a fixed interest rate of 2.766%, payable by the subsidiary, and the variable interest rate, the one-month LIBOR, payable by the third party. The difference between the subsidiary’s fixed rate of 2.766% and the one-month LIBOR rate, which is reset every 30 days, is received or paid every 30 days in arrears. As of September 30, 2009, we had borrowed $215.4 million under our Senior Debt facility. After considering the $50.0 million of interest rate swaps in place with respect to our bank borrowings, a hypothetical 100 basis points increase in interest rates under our Senior Debt facility would result in an increase of $1,654,000 on our annual interest expense. See “Managements Discussion and Analysis of Financial Condition and Results of Operations – Liquidity and capital resources – Senior Debt facility” elsewhere in this report.

At September 30, 2009, we had $2,257,000 of cash and equivalents invested in money market mutual funds held at one financial institution, which is in excess of FDIC insurance limits. We also had certificates of deposit for $1.9 million held at two financial institutions, which is in excess of FDIC insurance limits. The money market mutual funds are not invested in any auction rate securities.

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ITEM 4. CONTROLS AND PROCEDURES

Controls and Procedures

The Company’s management carried out an evaluation, as required by Rule 13a-15(b) of the Securities Exchange Act of 1934 (the “Exchange Act”), with the participation of our Chief Executive Officer and our Chief Financial Officer, of the effectiveness of our disclosure controls and procedures, as of the end of our last fiscal quarter. Based upon this evaluation, the Chief Executive Officer and the Chief Financial Officer concluded that our disclosure controls and procedures were effective as of the end of the period covered by this Quarterly Report on Form 10-Q, such that the information relating to the Company and its consolidated subsidiaries required to be disclosed in our Exchange Act reports filed with the SEC (i) is recorded, processed, summarized and reported within the time periods specified in SEC rules and forms, and (ii) is accumulated and communicated to the Company’s management, including our Chief Executive Office and Chief Financial Officer, as appropriate to allow timely decisions regarding required disclosure.

In addition, the Company’s management carried out an evaluation, as required by Rule 13a-15(d) of the Exchange Act, with the participation of our Chief Executive Officer and our Chief Financial Officer, of changes in the Company’s internal control over financial reporting. Based on this evaluation, the Chief Executive Officer and Chief Financial Officer concluded that no change in internal control over financial reporting occurred during the quarter ended September 30, 2009, that has materially affected, or is reasonably likely to materially affect, the Company’s internal control over financial reporting.

PART II. OTHER INFORMATION

ITEM 1A. RISK FACTORS

The Company included in its Annual Report on Form 10-K for the year ended December 31, 2008 a description of certain risks and uncertainties that could affect the Company’s business, future performance or financial condition (See Part I, Item 1A “Risk Factors” in our Form 10-K). The Risk Factors as included in our Form 10-K are updated by the risk factors described below. You should carefully consider these risks, and the risks described in our Form 10-K, as well as other information contained in this Form 10-Q, including “Management’s discussion and analysis of financial condition and results of operations”. Any of these risks could significantly and adversely affect our business, prospects, financial condition and results of operations. These risks are not the only risks facing the Company. Additional risks and uncertainties not currently known to us or that we currently deem to be immaterial also may materially adversely affect our business, financial condition or future results.

Commodity margins continue to present a significant risk, which we may not be able to hedge against.

Our results of operations and financial condition depend substantially on the price of our main commodity input, corn, relative to the price of our main commodity product, ethanol, which is known in the industry as the “crush spread.” The prices of these commodities are volatile and beyond our control. As a result of the volatility of the prices for these and other items, our results fluctuate substantially and in ways largely beyond our control. As shown in the accompanying consolidated financial statements, the Company incurred a net loss of $8.4 million and $28.5 million during the three and nine months ended September 30, 2009, respectively, primarily resulting from poor operating margins due to unfavorable crush spreads. Although our losses narrowed in the third quarter, and crush spreads have steadily improved throughout the year to date, we cannot predict when or if crush spreads will narrow again or if the current improved margins will continue. In the event crush spreads narrow further, and remain at unprofitable levels for an extended period of time, we may not be able to generate sufficient cash flow to meet our obligations and sustain our operations.

We have developed and adopted a risk management policy under which we may enter into contracts, including exchange-traded futures contracts, to sell a portion of our ethanol and distillers grain production or to purchase a portion of our corn or natural gas requirements on a forward basis to attempt to offset some of the effects of volatility of ethanol prices and costs of commodities. We are currently unable to engage in such hedging activities due to our lack of financial resources, and we may not have the financial resources to conduct hedging activities in the future. In addition, ethanol futures have historically traded with an inverted price progression, or “strip,” whereby outer month contracts are priced at lower prices than spot or near-month contracts. In contrast, corn futures historically have traded such that outer months have higher prices than near or spot months. As a result, even under market conditions in which we realize positive margins at current (spot) prices we may not be able to lock in such margins for future production. Furthermore, because of the lack of an established futures market or established markets for future physical delivery of ethanol, we may not be able to price a material amount of our future production so as to permit us to hedge a material portion of our commodities price risks.

There are significant risks arising from the substantial amount of indebtedness we have incurred.

The Operating Subsidiaries of the LLC entered into a Senior Secured Credit Facility originally providing for the availability of an aggregate of $230.0 million of borrowings (“Senior Debt”) with BNP Paribas and a syndicate of lenders to finance construction and operation of the Wood River and Fairmont plants. The Senior Debt initially consisted of two construction loans, which together totaled $210.0 million of available borrowings, and working capital loans of up to $20.0 million. No principal payments were required until the construction loans were converted to term loans. Thereafter, principal payments are payable quarterly at a minimum amount of $3,150,000, with additional pre-payments to be made out of available cash flow. The Company received a Notice of Default from the lenders, dated May 22, 2009, asserting that a “material adverse effect” had occurred due to the Company’s lack of liquidity. The Company disagreed with the lenders assertion that a material adverse effect had occurred and, beginning on May 28, 2009, entered into a series of consent agreements with its lenders granting the Company limited access to its bank accounts as it continued discussions with the lenders relating to the asserted events of default and conversion of the construction loans to term loans. Effective September 29, 2009, the Operating Subsidiaries entered into a Waiver and Amendment to the Senior Debt which converted the two construction loans to two term loans and waived all defaults previously asserted by the lenders. At conversion, the Waiver and Amendment to the Senior Debt provided for $198.6 million of total funded debt under the term loans. Following the conversion, the Operating Subsidiaries made their first principal payment on September 30, 2009 of $3.2 million resulting in $195.4 million in term loans outstanding as of September 30, 2009. The Waiver and Amendment to the Senior Debt also provides for up to $9.7 million in additional loans to make future principal and interest payments under the Senior Debt. The term loans mature in September 2014.

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Although, as of September 30, 2009, we had borrowed a total of $215.4 million (including the term loans and $20 million in working capital loans) under our Senior Debt facility, additional borrowings under the remaining debt service reserve availability of $9.7 million remain subject to the satisfaction of a number of additional conditions precedent, including compliance with debt covenants and payment of principal and interest when due. To the extent that we are not able to satisfy these requirements, we will not be able to make additional borrowings under our Senior Debt facility without obtaining a waiver or consent from the lenders, which could prevent or delay our borrowing. In addition, our Senior Debt facility agreement contains standard clauses regarding occurrence of a ‘‘material adverse effect,’’ which is defined very broadly and in such fashion as to be subjective. As discussed above, our lenders previously asserted that a “material adverse effect” had occurred under our Senior Debt facility in May, 2009. Irrespective of the recent resolution of that dispute, in the event our banks should assert in the future that a ‘‘material adverse effect’’ has occurred, they could declare us in default and accelerate payment of all principal and interest due, or prevent us from borrowing additional funds under the Senior Debt facility

During our limited period of operations we have been unable to consistently generate positive cash flow, most recently due to the narrow crush spread experienced in the commodities markets. If this should recur, we may not be able to generate enough cash flow from operations in the future or obtain enough additional capital to service our debt, finance our business operations or fund our planned capital expenditures. In addition, we have had, and continue to have, severely limited liquidity, with $8.2 million in cash on hand as of September 30, 2009. If we do not have sufficient cash flow to service our debt, we would need to refinance all or part of our existing debt, sell assets, borrow more money or sell securities, any or all of which we may not be able to do on commercially reasonable terms or at all. If we are unable to do so, we may be required to curtail operations or cease operating altogether, and could be forced to seek relief from creditors through a filing under the U.S. Bankruptcy Code.

A default under our Senior Debt facility would also constitute a default under our subordinated debt and would entitle both the senior lenders and the subordinated lenders to accelerate the repayment of amounts outstanding. In the event of a default, the lenders could also proceed to foreclose against the assets securing such obligations, although the ability of the lenders under our subordinated debt to do so, or to pursue other remedies against the LLC and its subsidiaries, would be subject to, and substantially limited by, the subordination agreement among the subordinated debt lenders, the lenders under our Senior Debt facility, and the LLC and its subsidiaries. The receipt by the Company of the Notice of Default dated May 22, 2009, from the lenders under the Senior Debt facility constituted an event of default under the Subordinated Debt. The lenders under our subordinated debt did not elect to exercise any of the rights and remedies available to them as a result of the Notice of Default under the Senior Debt facility, and did not declare or otherwise provide a notice of acceleration. Since all of the asserted events of default under the Senior Debt facility were waived by the lenders under that facility on September 29, 2009, there is no longer an event of default under the Subordinated Debt.

Because the debt under our existing arrangements subjects substantially all of our assets to liens, there may be no assets left for stockholders in the event of a liquidation. In the event of a foreclosure on all or substantially all of our assets, we may not be able to continue to operate as a going concern.

We have encountered unanticipated difficulties in operating our plants, which may recur and cause us to incur substantial losses.

We are aware of certain plant design and construction defects that may impede the reliable operation of the plants and continuous operations. We are in the process of addressing these and a variety of other reliability issues at our plants, but we have no assurance that our initiatives will be successful or can be implemented in a timely fashion or without an extended period of interruption to operations. As a result, we have encountered unanticipated difficulties and the operation of our plants has been in some respects more costly or inefficient than we anticipated, and this may recur in the future. We may be entitled to damages from our general contractor for warranty claims under our engineering, procurement and construction contracts for some of the unanticipated difficulties we have encountered in operating our plants due to deficiencies in design, construction or materials, but we have no assurance of our ability to obtain payment for any damages or that such damages, if paid to us, will fully compensate us for the cost of remedying such defects. In any event, we will not be able to recover lost sales or lost profits that have resulted, or might result in the future, from any defect in the design or construction of our plants.

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We may also encounter other factors that could prevent us from conducting operations as expected, resulting in decreased capacity or interruptions in production, including shortages of workers or materials, design issues relating to improvements, construction, repair and equipment cost escalation, transportation constraints, adverse weather, unforeseen difficulties or labor issues, or changes in political administrations at the federal, state or local levels that result in policy change towards ethanol in general or our plants in particular. Our operations may be subject to significant interruption if any of our facilities experiences a major accident or is damaged by severe weather or other natural disasters. In addition, our operations may be subject to labor disruptions, unscheduled downtime or other operational hazards inherent in our industry. Some of these operational hazards may cause personal injury or loss of life, severe damage to or destruction of property and equipment or environmental damage, and may result in suspension of operations and the imposition of civil or criminal penalties. Our insurance may not be adequate to cover the potential operational hazards described above and we may not be able to renew our insurance on commercially reasonable terms or at all. Any interruption or cessation of operations due to any of the above factors would cause our sales to decrease significantly, which would have a material adverse effect on our results of operation and financial condition.

We face intense competition for qualified personnel to operate our ethanol plants.

Our success depends in large part on our ability to attract and retain competent personnel. At each of our plants we must retain qualified managers, engineers, maintenance, operations and other personnel, which can be challenging in a rural community. Competition for both managers and plant employees in the ethanol industry can be intense, particularly as competitors have begun operating plants in close proximity to ours. Although we have hired substantially all of the personnel necessary to operate our plants, we currently have vacancies for certain key operations managers which we have had difficulty filling, particularly as our liquidity issues and our dispute with our lenders under the Senior Debt facility became widely known in the industry. If we are unable to hire and maintain or retain productive and competent personnel, our operations may be adversely affected and we may not be able to efficiently operate our ethanol plants.

Our common stock could be delisted from The Nasdaq Global Market, which could negatively impact the price of our common stock and our ability to access the capital markets.

Our common stock is currently listed on The Nasdaq Global Market under the symbol ‘‘BIOF.’’ The listing standards of The Nasdaq Global Market provide, among other things, that a company may be delisted if the bid price of its stock drops below $1.00 for a period of 30 consecutive business days. On September 15, 2009, we received a Nasdaq Staff Deficiency Letter, indicating that the Company had failed to comply with the minimum bid price requirement for continued listing. The listing rules also provide a grace period of 180 calendar days during which, should the closing price of the Company’s stock reach $1.00 or higher for ten or more consecutive trading days, the Company would once again be in compliance with the Rule. On October 28, 2009, we received another letter from the Nasdaq staff, indicating that the closing bid price of the Company’s common stock had been at $1.00 per share or greater for at least the previous 10 consecutive business days and that, accordingly, the Company had regained compliance in accordance with the listing rules. Although we are once again in compliance with the listing rules of the Nasdaq Global Market, trading in our stock remains volatile and there can be no assurances that our stock price will not fall below $1.00 again or, if it does, that it will not trade below $1.00 for 30 consecutive business days.

If we were to receive another Nasdaq Staff Determination Letter, we will have 180 days in which to satisfy the minimum bid price requirements. However, in such event, there can be no assurances that our stock would trade above $1.00 for the 10 consecutive business days required to regain compliance. If we fail to comply with the listing standards, our common stock listing may be moved, in our discretion and subject to the satisfaction of certain listing requirements, including, without limitation, the payment of a listing fee, to the Nasdaq Capital Market, which is a lower tier market, or our common stock may be delisted and traded on the over-the-counter bulletin board network. Moving our listing to the Nasdaq Capital Market could adversely affect the liquidity of our common stock. The delisting of our common stock would significantly affect the ability of investors to trade our securities and could significantly negatively affect the value and liquidity of our common stock. In addition, the delisting of our common stock could materially adversely affect our ability to raise capital on terms acceptable to us or at all. Delisting from Nasdaq could also have other negative results, including the potential loss of confidence by suppliers and employees, the loss of institutional investor interest and fewer business development opportunities.

ITEM3. DEFAULTS UPON SENIOR SECURITIES

Please see Part I, Item 2—Management’s Discussion and Analysis of Financial Condition and Result of Operations—Senior Debt Facility, and —Subordinated Debt agreement, for more information.

ITEM 6.	EXHIBITS
Exhibit Number	Exhibit
3.1	Amended and Restated Certificate of Incorporation of BioFuel Energy Corp. (incorporated by reference to Exhibit 3.1 to the Company’s Form 8-K filed June 19, 2007)
3.2	BioFuel Energy Corp. Bylaws, as Amended and Restated (incorporated by reference to Exhibit 3.2 to the Company’s Form 8-K filed March 23, 2009)

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10.1	Waiver and Amendment dated September 29, 2009, pursuant to that certain Credit Agreement, dated as of September 25, 2006, among BFE Operating Company, LLC, Buffalo Lake Energy, LLC, and Pioneer Trail Energy, LLC (collectively, as "Borrowers"), BFE Operating Company, LLC as Borrowers’ Agent, the Lenders party thereto, BNP Paribas, as Administrative Agent and Arranger, and Deutsche Bank Trust Company Americas, as Collateral Agent, incorporated by reference from the Company’s Current Report on Form 8-K filed with the SEC on September 30, 2009.
10.2	Agreement and Omnibus Amendment dated as of July 30, 2009, among Buffalo Lake Energy, LLC, Cargill, Incorporated and Cargill Commodity Services, Inc., incorporated by reference from the Company’s Quarterly Report on Form 10-Q for the period ended June 30, 2009, filed with the SEC on August 14, 2009.
10.3	Agreement and Omnibus Amendment dated as of July 30, 2009, among Pioneer Trail Energy, LLC, Cargill, Incorporated and Cargill Commodity Services, Inc., incorporated by reference from the Company’s Quarterly Report on Form 10-Q for the period ended June 30, 2009, filed with the SEC on August 14, 2009.
31.1	Certification of the Company’s Chief Executive Officer Pursuant To Section 302 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. Section 7241).
31.2	Certification of the Company’s Chief Financial Officer Pursuant To Section 302 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. Section 7241).
32.1	Certification of the Company’s Chief Executive Officer Pursuant To Section 906 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. Section 1350).
32.2	Certification of the Company’s Chief Financial Officer Pursuant To Section 906 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. Section 1350).
99.1	Press Release Announcing Results for Third Quarter of 2009

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SIGNATURES

Pursuant to the requirements of Section 13 or 15(d) of the Securities Exchange Act of 1934, the Registrant has duly caused this report to be signed on its behalf by the undersigned, thereunto duly authorized.

	BIOFUEL ENERGY CORP.
	(Registrant)
Date: November 13, 2009	By:	/s/ Scott H. Pearce
	Scott H. Pearce,
	President,
	Chief Executive Officer and Director
Date: November 13, 2009	By:	/s/ Kelly G. Maguire
	Kelly G. Maguire,
	Vice President - Finance and Chief Financial Officer

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INDEX TO EXHIBITS

Exhibit Number	Exhibit
3.1	Amended and Restated Certificate of Incorporation of BioFuel Energy Corp. (incorporated by reference to Exhibit 3.1 to the Company’s Form 8-K filed June 19, 2007)
3.2	BioFuel Energy Corp. Bylaws, as Amended and Restated (incorporated by reference to Exhibit 3.2 to the Company’s Form 8-K filed March 23, 2009)
10.1	Waiver and Amendment dated September 29, 2009, pursuant to that certain Credit Agreement, dated as of September 25, 2006, among BFE Operating Company, LLC, Buffalo Lake Energy, LLC, and Pioneer Trail Energy, LLC (collectively, as "Borrowers"), BFE Operating Company, LLC as Borrowers’ Agent, the Lenders party thereto, BNP Paribas, as Administrative Agent and Arranger, and Deutsche Bank Trust Company Americas, as Collateral Agent, incorporated by reference from the Company’s Current Report on Form 8-K filed with the SEC on September 30, 2009.
10.2	Agreement and Omnibus Amendment dated as of July 30, 2009, among Buffalo Lake Energy, LLC, Cargill, Incorporated and Cargill Commodity Services, Inc., incorporated by reference from the Company’s Quarterly Report on Form 10-Q for the period ended June 30, 2009, filed with the SEC on August 14, 2009.
10.3	Agreement and Omnibus Amendment dated as of July 30, 2009, among Pioneer Trail Energy, LLC, Cargill, Incorporated and Cargill Commodity Services, Inc., incorporated by reference from the Company’s Quarterly Report on Form 10-Q for the period ended June 30, 2009, filed with the SEC on August 14, 2009.
31.1	Certification of the Company’s Chief Executive Officer Pursuant To Section 302 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. Section 7241).
31.2	Certification of the Company’s Chief Financial Officer Pursuant To Section 302 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. Section 7241).
32.1	Certification of the Company’s Chief Executive Officer Pursuant To Section 906 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. Section 1350).
32.2	Certification of the Company’s Chief Financial Officer Pursuant To Section 906 of the Sarbanes-Oxley Act of 2002 (18 U.S.C. Section 1350).
99.1	Press Release Announcing Results for Third Quarter of 2009

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