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CONDENSED CONSOLIDATED STATEMENTS OF CASH FLOWS (USD $)
In Thousands, unless otherwise specified
3 Months Ended
Mar. 31, 2015
Mar. 31, 2014
Cash flows from operating activities:    
Net loss $ (50,777)us-gaap_NetIncomeLoss $ (250,943)us-gaap_NetIncomeLoss
Adjustments to reconcile net loss to net cash used in operating activities:    
Depreciation and amortization 3,690us-gaap_DepreciationDepletionAndAmortization 2,600us-gaap_DepreciationDepletionAndAmortization
Non-cash stock-based compensation 8,236us-gaap_ShareBasedCompensation 5,591us-gaap_ShareBasedCompensation
Charge for 401(k) company stock match 247us-gaap_OtherNoncashIncomeExpense 157us-gaap_OtherNoncashIncomeExpense
Benefit from intraperiod tax allocation (431)us-gaap_IncomeTaxExpenseBenefitIntraperiodTaxAllocation (17,870)us-gaap_IncomeTaxExpenseBenefitIntraperiodTaxAllocation
In-process research and development   224,656us-gaap_ResearchAndDevelopmentAssetAcquiredOtherThanThroughBusinessCombinationWrittenOff
Changes in operating assets and liabilities:    
Billed and unbilled collaboration receivables 29,830us-gaap_IncreaseDecreaseInReceivables 4,084us-gaap_IncreaseDecreaseInReceivables
Prepaid expenses and other assets (3,179)us-gaap_IncreaseDecreaseInPrepaidDeferredExpenseAndOtherAssets (4,499)us-gaap_IncreaseDecreaseInPrepaidDeferredExpenseAndOtherAssets
Accounts payable 750us-gaap_IncreaseDecreaseInAccountsPayable (1,379)us-gaap_IncreaseDecreaseInAccountsPayable
Accrued expenses and other (8,432)us-gaap_IncreaseDecreaseInOtherAccruedLiabilities 3,773us-gaap_IncreaseDecreaseInOtherAccruedLiabilities
Deferred revenue (6,189)us-gaap_IncreaseDecreaseInDeferredRevenue (7,845)us-gaap_IncreaseDecreaseInDeferredRevenue
Net cash used in operating activities (26,255)us-gaap_NetCashProvidedByUsedInOperatingActivitiesContinuingOperations (41,675)us-gaap_NetCashProvidedByUsedInOperatingActivitiesContinuingOperations
Cash flows from investing activities:    
Purchases of property and equipment (2,110)us-gaap_PaymentsToAcquirePropertyPlantAndEquipment (388)us-gaap_PaymentsToAcquirePropertyPlantAndEquipment
Increase in restricted cash (288)us-gaap_IncreaseDecreaseInRestrictedCash  
Purchases of marketable securities (507,617)us-gaap_PaymentsToAcquireAvailableForSaleSecuritiesDebt (487,598)us-gaap_PaymentsToAcquireAvailableForSaleSecuritiesDebt
Sales and maturities of marketable securities 168,687us-gaap_ProceedsFromSaleAndMaturityOfAvailableForSaleSecurities 133,206us-gaap_ProceedsFromSaleAndMaturityOfAvailableForSaleSecurities
Payment for asset acquisition   (25,000)us-gaap_PaymentsToAcquireIntangibleAssets
Net cash used in investing activities (341,328)us-gaap_NetCashProvidedByUsedInInvestingActivitiesContinuingOperations (379,780)us-gaap_NetCashProvidedByUsedInInvestingActivitiesContinuingOperations
Cash flows from financing activities:    
Proceeds from exercise of stock options and other types of equity 13,566us-gaap_ProceedsFromIssuanceOfSharesUnderIncentiveAndShareBasedCompensationPlansIncludingStockOptions 11,541us-gaap_ProceedsFromIssuanceOfSharesUnderIncentiveAndShareBasedCompensationPlansIncludingStockOptions
Proceeds from issuance of common stock, net of offering costs 496,400us-gaap_ProceedsFromIssuanceOfCommonStock  
Proceeds from issuance of common stock to Genzyme 89,018us-gaap_ProceedsFromIssuanceOfPrivatePlacement 723,037us-gaap_ProceedsFromIssuanceOfPrivatePlacement
Payments for repurchase of common stock for employee tax withholding   (15,703)us-gaap_PaymentsRelatedToTaxWithholdingForShareBasedCompensation
Net cash provided by financing activities 598,984us-gaap_NetCashProvidedByUsedInFinancingActivitiesContinuingOperations 718,875us-gaap_NetCashProvidedByUsedInFinancingActivitiesContinuingOperations
Net increase in cash and cash equivalents 231,401us-gaap_CashAndCashEquivalentsPeriodIncreaseDecrease 297,420us-gaap_CashAndCashEquivalentsPeriodIncreaseDecrease
Cash and cash equivalents, beginning of period 75,179us-gaap_CashAndCashEquivalentsAtCarryingValue 53,169us-gaap_CashAndCashEquivalentsAtCarryingValue
Cash and cash equivalents, end of period $ 306,580us-gaap_CashAndCashEquivalentsAtCarryingValue $ 350,589us-gaap_CashAndCashEquivalentsAtCarryingValue