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Segment Information (Details) - USD ($)
$ in Thousands
3 Months Ended 9 Months Ended
Oct. 02, 2016
Sep. 27, 2015
Oct. 02, 2016
Sep. 27, 2015
Jan. 03, 2016
Segment Reporting Information [Line Items]          
Segment revenues $ 607,139 $ 550,271 $ 1,779,026 $ 1,628,214  
Segment operating income (loss) 160,702 140,782 444,016 468,841  
Segment assets 4,227,827   4,227,827   $ 3,687,747
Core Illumina          
Segment Reporting Information [Line Items]          
Segment revenues 615,135 550,271 1,792,150 1,628,214  
Segment operating income (loss) 190,742 145,893 501,411 473,952  
Segment assets 4,095,182   4,095,182   3,657,953
Consolidated VIEs          
Segment Reporting Information [Line Items]          
Segment operating income (loss) (25,136) $ (5,111) (49,700) $ (5,111)  
Segment assets 190,904   190,904   30,447
Intersegment Eliminations          
Segment Reporting Information [Line Items]          
Segment revenues (7,996)   (13,124)    
Segment operating income (loss) (4,904)   (7,695)    
Segment assets $ (58,259)   $ (58,259)   $ (653)