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Income Taxes (Tables)
12 Months Ended
Dec. 31, 2016
Income Tax Disclosure [Abstract]  
Company’s loss from operations before income tax expense by jurisdiction
The Company’s loss from operations before income tax expense by jurisdiction for the year ended December 31 are as follows (in thousands):
 
 
 
2016
 
2015
 
2014
 
Domestic
 
$
(273,134)
 
$
(150,227)
 
$
(76,742)
 
Foreign
 
 
(6,832)
 
 
(6,710)
 
 
(6,205)
 
Total net loss
 
$
(279,966)
 
$
(156,937)
 
$
(82,947)
 
Deferred Tax Assets (Liabilities)
Deferred tax assets (liabilities) consist of the following at December 31 (in thousands):
 
 
 
2016
 
2015
 
Net operating losses U.S.
 
$
286,619
 
$
203,284
 
Net operating losses foreign
 
 
9,011
 
 
8,360
 
Research tax credits
 
 
23,260
 
 
16,491
 
Deferred revenue
 
 
10,121
 
 
922
 
Original discount interest
 
 
12,445
 
 
 
Other
 
 
17,981
 
 
11,981
 
Total deferred tax assets
 
 
359,437
 
 
241,038
 
Intangibles
 
 
(2,090)
 
 
(2,415)
 
Other
 
 
(2,817)
 
 
(1,767)
 
Total deferred tax liabilities
 
 
(4,907)
 
 
(4,182)
 
Net deferred tax assets
 
 
354,530
 
 
236,856
 
Less valuation allowance
 
 
(354,530)
 
 
(236,856)
 
Deferred tax assets, net
 
$
 
$
 
Tax Rate Differences
The differences between the U.S. federal statutory tax rate and the Company’s effective tax rate are as follows:
 
 
 
2016
 
2015
 
2014
 
Statutory federal tax rate
 
 
(34)
%
 
(34)
%
 
(34)
%
State income taxes, net of federal benefit
 
 
(3)
%
 
(3)
%
 
(3)
%
Research and development and other tax credits
 
 
(2)
%
 
(3)
%
 
(2)
%
Release of FIN 48 liability
 
 
0
%
 
(2)
%
 
0
%
Other
 
 
2
%
 
1
%
 
2
%
Change in valuation allowance
 
 
37
%
 
41
%
 
37
%
 
 
 
0
%
 
0
%
 
0
%
Tax Return Reported Federal Net Operating Losses and Tax Credits Available
As of December 31, 2016, the Company had tax return reported federal net operating losses and tax credits available as follows (in thousands):
 
 
 
Amount
 
Federal net operating losses expiring through the year 2036
 
$
781,019
 
Foreign net operating losses (no expiration)
 
 
40,957
 
Research tax credits expiring through the year 2036
 
 
23,166
 
Alternative-minimum tax credit (no expiration)
 
 
94
 
Reconciliation of Unrecognized Tax Benefits
Tabular Reconciliation of Unrecognized Tax Benefits (in thousands):
 
 
 
Amount
 
Unrecognized tax benefits as of January 1, 2015
 
$
4,801
 
Gross increases — tax positions in prior period
 
 
 
Gross decreases — tax positions in prior period
 
 
4,587
 
Gross increases — current-period tax positions
 
 
 
Increases (decreases) from settlements
 
 
 
Unrecognized tax benefits as of December 31, 2015
 
$
214
 
Gross increases — tax positions in prior period
 
 
 
Gross decreases — tax positions in prior period
 
 
214
 
Gross increases — current-period tax positions
 
 
 
Increases (decreases) from settlements
 
 
 
Unrecognized tax benefits as of December 31, 2016
 
$