Exhibit 107

Calculation of Filing Fee Tables

FORM S-3

(Form Type)

Bionano Genomics, Inc.

(Exact Name of Registrant as Specified in its Charter)

Table 1: Newly Registered Securities^*

Security Type

Security Class Title

Fee Calculation or Carry Forward Rule

Amount Registered

Proposed Maximum Offering Price Per Unit(1)

Maximum Aggregate Offering Price

Fee Rate

Amount of Registration Fee(1)

Carry Forward Form Type

Carry Forward File Number

Carry Forward Initial effective date

Filing Fee Previously Paid In Connection with Unsold Securities to be Carried Forward

Newly Registered Securities

Fees to Be Paid

Equity

Common Stock, $0.0001 par value per share(2)

457(c)

2,250,000

$0.97

$2,171,250.00

0.00014760

$320.48

Fees to Be Paid

Equity

Common Stock, $0.0001 par value per share, underlying debentures(2)

457(c)

10,000,000

$0.97

$9,650,000.00

0.00014760

$1.424.34

Fees Previously Paid

Carry Forward Securities

Carry Forward Securities

Total Offering Amounts

$1,744.82

Total Fees Previously Paid

$0.00

Total Fee Offsets

—

Net Fee Due

$1,744.82

(1)	Estimated solely for the purpose of calculating the registration fee in accordance with Rule 457(c) of the Securities Act of 1933, as amended, based upon the average of the high and low prices for a share of the registrant’s common stock as reported on The NASDAQ Capital Market on June 3, 2024.
(2)	Pursuant to Rule 416 under the Securities Act, the securities being registered hereunder include such indeterminate number of additional shares of common stock as may be issued after the date hereof as a result of stock splits, stock dividends or similar transactions.

Table 2: Fee Offset Claims and Sources

N/A

2